barSeed - Barley Seed Development Database

Probe CUST_15817_PI390587928

Source Contig U35_13767

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_15817_PI390587928	Hv_44K_v2	CCCTTTCCGTGGGAATAATTCTGATACTGTTTCCATACTTGAATTCATAATGATTTACCT	1038	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.311	1.652	1.438	1.266	0.685	1.619
Raw	25.730	222.117	164.456	245.254	41.589	112.187

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64966.1	1181	2e-24	1053 - 1112	100	60 / 60	plus	ABC06515 ABC06516
JLOC1	JLOC1_42704.1	1279	8e-25	1059 - 1118	100	60 / 60	plus
Harvest21	ABC06516	1127	3e-25	1042 - 1101	100	60 / 60	plus	ABC06516
Harvest35	U35_13767	1124	3e-25	1039 - 1098	100	60 / 60	plus

Contig Sequence (1124 bp)

>U35_13767 1124 Hv_44K_v2
ACGATCTANCTAACTTGAATAGACCGAGTAGCGCCATCGTAAGCAACACCCACAGACCGA
TCATGGCGGCGCGCGCCATTGTTGTCCTCTCGCTCATCCTCGCGCTGGTCGCCATCTCCA
GTGGAGGAGCGTCGGCGCAGCTGTCGTCGGGCTTCTACTCCCACACGTGCCCGGGCATGC
TCAAAGCCGTGCGCTCGGCACTGCACCCGGCCATCGGCAGGGAGCGGCGCGTGGGCGCCT
CCATCGTCCGCCTCTACTTCCACGATTGCTTCGTCCAGGGCTGCGACGCCTCGCTGCTGC
TGGACGACGCGCCGGGCCTGCGTGGTGAGAAGAACGCCACGCCCAACAAGAACTCCGCCA
GGGGTTTCGAGGTCATCGACGCCGTCAAGGCGGCCGTCGAGGAGTGTTGTCCCGGCGTCG
TCTCCTGCGCTGACATCCTCGCCATCGCCGCCGAGGAGAGCGTTGTCTTCCTGGGTGGCC
CGAGCTGGGAGGTGAAGATGGGGCGGAGAGACTCGACGACGGCCAGCTTCAACGGCGCCG
AGAACAACATCCCACCGCCCACGTCGGGGCTCGCAAACCTTACGTCCCTCTTCGCCGCGC
AGGGGCTCTCCCAGAAAGACATGGTCGCACTCTCAGGAGCGCACACAATCGGCCTAGCAC
GCTGCACAAACTTCCGGGACCACGTCTACAACGACACCAACATCGATGCCGACTTTGCCA
GGAGCCACCAGTCAGGCTGCCCTCGCGCCACAGGCTCCGGCGACAACAACCTGGCGCCGC
TGGACCTGCAGACCCCGACCGTATTCGAGAACAACTACTACAAAAACCTCGTCCAGAAGA
GGGGCCTCCTGCACTCGGACCAAGAGCTTTTTAATGGTGGCGCTGCTGACGCGCTGGTCC
GGGAGTACGTCAGTAGCCAGAGCGTCTTCTTCAAGGACTTTGTGGAGGGAATGGTCAAGA
TGGGGGACATCATGCCTCTGACGGGATCCAGTGGACAGATCAGGATGAACTGCAGGAGGA
TCAACTAAGATTGTTCTGCCCTTTCCGTGGGAATAATTCTGATACTGTTTCCATACTTGA
ATTCATAATGATTTACCTTTTTCACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13767 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g02130.1	325	4e-166	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g25660.1	328	1e-172
Arabidopsis v10	AT5G05340.1	324	2e-131	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324