barSeed - Barley Seed Development Database

Probe CUST_5156_PI390587928

Source Contig U35_13760

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5156_PI390587928	Hv_44K_v2	CAATGTACGTTGTGTCTGTTGGGTTAATAAAAGGCCTACCAGTCTATAGCCAGGAAAAAA	1157	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.021	0.044	0.571	1.668	1.791	4.254
Raw	3.585	16.984	199.900	933.403	323.516	855.489

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375268	1236	3e-21	1183 - 1236	100	54 / 54	plus	ABC01871 ABC06515 ABC06516
JLOC1	JLOC1_31927.1	1039	1e-22	876 - 931	100	56 / 56	plus
Harvest21	ABC06515	1228	3e-25	1158 - 1217	100	60 / 60	plus	ABC06515
Harvest35	U35_13760	1228	3e-25	1158 - 1217	100	60 / 60	plus

Contig Sequence (1228 bp)

>U35_13760 1228 Hv_44K_v2
ATCTATCTAGCTAGCTAGATAGCTAACACAGTTGATTCCATCGATAATGGCGGCGCGTGC
CATTGTCGTCCTGGTCTCGCTCGTCCTAGCGGTGGTCGCCGGCGGCGCGTCGGCGCAGCT
GTCGTCGGGCTTCTACTCGCGCTCGTGCCCGGGCATGCTCAAAGCCGTGCGCTCGGCGCT
GCACCCGGCGATCACCAGGGAGCGCCGCGTGGGCGCCTCCATCGTCCGCCTCTTCTTCCA
CGACTGCTTCGTCCAGGGCTGCGACGCCTCGCTGCTGCTGGACGACGCGCCGGGGCTGCG
CGGCGAGAAGAACGCCGCGCCCAACAAGAACTCCGTCAGGGGGTTCGAGGTCATCGACGC
CATCAAGGCGGCCGTCGAGAAGGAGTGTCCCGGCGTCGTCTCCTGCGCCGACGTCCTCGC
CGTCGCCGCCGAGGAGAGCGTCGTTTTCCTGGGTGGCCCGAGCTGGGAGGTGAAGATGGG
GCGGAGAGACTCGACGACGGCGAGCTTCACCGGCGCCGAGAACAACATCCCACCGCCCAC
GTCGGGGCTCGCAAACCTCACGTCCCTCTTCGCCGCGCAGGGGTTGTGCCAGAAGGACAT
GGTCGCGCTCTCAGGAGCGCACACGATCGGCCTGGCACGCTGCACAAACTTCCGGGACCA
CATCTACAACGACACCAACATCGACGACGGCTTCGCCAGGAGCCGCCAGTCAGGCTGCCC
TCGCACCGCCGGCTTCGGCGACAACAACCTGGCGCCGCTGGACCTGCAGACCCCGACCGT
CTTCGAGAACAACTACTACAAGAACCTCGTCCAGAAGAGGGCCCTCCTACACTCGGACCA
GGAGCTCTTAAACGGCGGCGCCGCCGACGCGCTGGTCCGGCAGTACGTCGGCAGCCAGAG
CTCATTCTTCAAGGACTTCGTGGTGGGGATGGTCAAGATGGGGGACATCGGGCCGCTGAC
GGGGTCCAGCGGACAGATCAGGAAGAACTGCAGGAGGATCAACTAAGAAAAGATCCTCCA
CTTTGAGCGCAGACAATTGCGAAATCCCTAGAAATGCAGCACAATCCGTAGCAATTCGGG
ATGTGTTTGATCGCGCCCAAGCTTGCAAGCAGCTTGTAGTTTCCTGTCGTTCGACTCTGT
TTCTGCAATTGTCAAACCAATGTACGTTGTGTCTGTTGGGTTAATAAAAGGCCTACCAGT
CTATAGCCAGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_13760 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g02130.1	325	2e-164	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g25660.1	328	1e-169
Arabidopsis v10	AT5G05340.1	324	9e-131	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324