barSeed - Barley Seed Development Database

Probe CUST_34667_PI390587928

Source Contig U35_13858

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34667_PI390587928	Hv_44K_v2	TCGTGCGTCCACAATTGTGAAATCAATATTGTACTGCAGCGATATGTCCGTTCATTGAAT	1157	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.059	0.060	0.901	3.165	1.687	2.458
Raw	12.807	18.027	288.322	1393.551	318.724	471.607

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366435	1250	2e-24	1154 - 1213	100	60 / 60	plus	ABC01871 ABC06515
MLOC	MLOC_1396.2	1002	2e-24	925 - 984	100	60 / 60	plus	ABC01871 ABC06515
MLOC	MLOC_1396.3	1000	2e-24	923 - 982	100	60 / 60	plus	ABC01871 ABC06515
MLOC	MLOC_1396.1	1011	2e-24	943 - 1002	100	60 / 60	plus	ABC01871 ABC06515
JLOC1	JLOC1_861.1	1123	8e-25	943 - 1002	100	60 / 60	plus
Harvest21	ABC01871	1029	3e-25	938 - 997	100	60 / 60	plus	ABC01871
Harvest35	U35_13858	1248	3e-25	1158 - 1217	100	60 / 60	plus

Contig Sequence (1248 bp)

>U35_13858 1248 Hv_44K_v2
AAGGCAACACACACGCACGCTCTAGCTAGTCAGCGTAGCAACAGGATATCCACAGTTGCA
CACGGCACGCACACACTCGGGCGCGAGCGAGTCGGGCATGGCTGCTGCAAGAGCAAGTGC
TCTGTGCGTCGTCCTGCTAGCCGTCATGGCGGCCGGCGGGGCGTCGGCGCAGCTGTCCAC
GGGGTTCTACTCGAGCTCGTGCCCGGGCGCGCTGGGCGCAGTCGCGTCGGTGGTGCAGTC
GGCCGTGGCGAACGAGCCGCGCATGGGCGCATCCATCCTCCGCCTCTTCTTCCACGACTG
CTTCGTCCAGGGCTGCGACGGGTCGCTGCTCCTGGACGACACTGCGAGCTTTCAGGGAGA
GAAGATGGCGACGCCCAACAACGGGTCGGTGCGTGGGTTCGAGGTCATCGACGCCATCAA
GGTGGCCGTCGAGAAGATCTGCCCAGGCGTCGTCTCCTGCGCCGACGTCCTCGCCATCGC
CGCCAGGGACAGCGTCGTCGCCCTGGGCGGGCCGAACTGGGCAGTGAAGGTTGGGCGGAG
GGACTCCACGACGGCGAGCTTCAGCGGCGCCAACAACAACATCCCGCCGCCGACGTCGGG
GCTCGCCAACCTCACGTCACTCTTCGCGGCGCAGGGACTCTCCCAGAAGGACATGGTCGC
GCTCTCCGGATCTCACACCATAGGCCAAGCTCGCTGCACCAACTTCCGAGCACACGTCTA
CAACGAGACCAACATCGACAGCGGCTTCGCCGGGACCCGCCGTTCCGGCTGCCCTCCCAA
CTCCGGCTCCGGCGACAACAACCTCGCACCGCTGGACCTCCAGACCCCGACCGCCTTCGA
GAACAACTACTACAAGAACCTGGTTGCCAAGAAGGGGCTCATGCACTCCGACCAGGAGCT
CTTCAACGGCGGGGCCACCGACCCGCTGGTCCAGTACTATGTCAGCAGCCAGAGCGCCTT
CTTCGCGGACTTCGTGGAAGGCATGATCAAGATGGGAGATATCTCGCCGCTCACAGGGAA
CAACGGAGAGGTCAGGAAGAACTGCAGGAAGATTAACTAAGAGAACCATTGCGGTCAAGG
GTGACACAGCGTGTGGAGTGAGAGATCCATGCTTTGTTGCAAGTTTGTGGTTCCATCTCG
TTTTTTTTTTCATTTTTTCGTGCGTCCACAATTGTGAAATCAATATTGTACTGCAGCGAT
ATGTCCGTTCATTGAATAATTCGACAATATATAAAAAAAAAAAAAAAA

Homology of Contig U35_13858 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g02130.1	325	2e-176	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g44530.1	330	7e-178
Arabidopsis v10	AT5G05340.1	324	4e-138	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324