barSeed - Barley Seed Development Database

Probe CUST_482_PI415269222

Source Contig TA36366_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_482_PI415269222	Hv_44K_v2	TCAAACCAATGTACGTTGTGTCTGTTGGGTTAATAAAAGGCCTACCAGTCTATAGCCAGG	1179	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.020	0.057	0.604	1.778	1.999	4.423
Raw	3.385	23.437	222.622	1060.484	382.589	938.440

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375268	1236	2e-24	1177 - 1236	100	60 / 60	plus	ABC01871 ABC06515 ABC06516
JLOC1	JLOC1_31927.1	1039	8e-25	870 - 929	100	60 / 60	plus
Harvest21	ABC06515	1228	3e-25	1152 - 1211	100	60 / 60	plus	ABC06515
Harvest35	U35_13760	1228	3e-25	1152 - 1211	100	60 / 60	plus

Contig Sequence (1239 bp)

>TA36366_4513 1239 Hv_44K_v2
ATCCAGCAAAACAAGCTCTCAAGGCACTATCTATCTAGCTAGCTAGATAGCTAACACAGT
TGATTCCATCGATAATGGCGGCGCGTGCCATTGTCGTCCTGGTCTCGCTCGTCCTAGCGG
TGGTCGCCGGCGGCGCGTCGGCGCAGCTGTCGTCGGGCTTCTACTCGCGCTCGTGCCCGG
GCATGCTCAAAGCCGTGCGCTCGGCGCTGCACCCGGCGATCACCAGGGAGCGCCGCGTGG
GCGCCTCCATCGTCCGCCTCTTCTTCCACGACTGCTTCGTCCAGGGCTGCGACGCCTCGC
TGCTGCTGGACGACGCGCCGGGGCTGCGCGGCGAGAAGAACGCCGCGCCCAACAAGAACT
CCGTCAGGGGGTTCGAGGTCATCGACGCCATCAAGGCGGCCGTCGAGAAGGAGTGTCCCG
GCGTCGTCTCCTGCGCCGACGTCCTCGCCGTCGCCGCCGAGGAGAGCGTCGTTTTCCTGG
GTGGCCCGAGCTGGGAGGTGAAGATGGGGCGGAGAGACTCGACGACGGCGAGCTTCACCG
GCGCCGAGAACAACATCCCACCGCCCACGTCGGGGCTCGCAAACCTCACGTCCCTCTTCG
CCGCGCAGGGGTTGTGCCAGAAGGACATGGTCGCGCTCTCAGGAGCGCACACGATCGGCC
TGGCACGCTGCACAAACTTCCGGGACCACATCTACAACGACACCAACATCGACGACGGCT
TCGCCAGGAGCCGCCAGTCAGGCTGCCCTCGCACCGCCGGCTTCGGCGACAACAACCTGG
CGCCGCTGGACCTGCAGACCCCGACCGTCTTCGAGAACAACTACTACAAGAACCTCGTCC
AGAAGAGGGCCCTCCTACACTCGGACCAGGAGCTCTTAAACGGCGGCGCCGCCGACGCGC
TGGTCCGGCAGTACGTCGGCAGCCAGAGCTCATTCTTCAAGGACTTCGTGGTGGGGATGG
TCAAGATGGGGGACATCGGGCCGCTGACGGGGTCCAGCGGACAGATCAGGAAGAACTGCA
GGAGGATCAACTAAGAAAAGATCCTCCACTTTGAGCGCAGACAATTGCGAAATCCCTAGA
AATGCAGCACAATCCGTAGCAATTCGGGATGTGTTTGATCGCGCCCAAGCTTGCAAGCAG
CTTGTAGTTTCCTGTCGTTCGACTCTGTTTCTGCAATTGTCAAACCAATGTACGTTGTGT
CTGTTGGGTTAATAAAAGGCCTACCAGTCTATAGCCAGG

Homology of Contig TA36366_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g02130.1	325	2e-164	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g25660.1	328	1e-169
Arabidopsis v10	AT5G05340.1	324	1e-130	Peroxidase superfamily protein \| chr5:1579142-1580819 REVERSE LENGTH=324