barSeed - Barley Seed Development Database

Probe ABC04478

Source Contig ABC04478

barSeed

Links

Affymetrix Source Sequence (1403 bp)

>ABC04478 1403
GTCCGTAGAGAGCACTCCCATCCCATGGCGTCTGGACAACCGGCCGTGCAGACCTTGGTT
CTGAGGGTCTCCATCCACTGCCATGGCTGCAAGAAGAAGATCCGCAAGGTGCTCAAGAGC
ATCCAAGGCGTGCAGGACGTGGAGGTAGATGCCCAGCAGCACAAAGTGATGGTGACGGGC
ACCGTGGACGCCGAGACGCTCGTCAAGAGGCTCTGCAAATCTGGCAAGCAGGCACTGCCA
TGGCAACACGAGCCCGCCGCGCCTGCCAAGAACCCCGAGGCCTCACCGCCGGCCACTCCG
GCTCAGGACGGCGGCAAGGACGATGCTGCTGCTGCGGCGGACAAGAAGCCAGCGGAGCCT
GTGAAGGAGCCGCAGGCCGACGACATCTCGGACAAGAAGCCGGAGCAGGAGGAGGAGACG
GCCCCGGAGAAGACGCCTCAGACGGACGAGGAAGCAGAGTCTGAGAAGAAGGAGGCTGAG
AAAGAGGAGGCGAAAGCAAGCGACGAGGCAAAGGAAGACGCCGGCGACGGCGAGGGCCCA
GCGGCCGAGCCCAAGGCAAAGGAGGACAAAAAGGACGCCGGCAGTGACGAGGGTGAGGCC
AGGAAGAAACAGAGCAAGCCCGACGACGCACCCGCCGCCGACAGGTCCCTCTCTCCGGCG
CCGGCGCCGGAGCACGCGCACCAGGAGTTCAGCCCGTACAACGCGCCGCAGCCGGTGATG
AGCTACCACACGGCGCAGCCGGGAACGAGCGTGTCCTACTACGCGCCGCAGCCGGAGCAA
GGCTACACCATGCGGCAGCAGCCATCGCAGCCGCAGCAGCCCGGGTACTCCTCCGTCATG
CAGCCGCGGCACCCACCGACGGCGCCGCAGCAGCAATGGTCGCCGTCGTACCTTTACATG
CCGTACCCGCACGCGTCGCCGGAGTCGTACTACCAGGACTACTACAGCCCGCCGGGGACG
CACGCGCCGCCACCACCTCCGGCGCCGCTCCAGGACTCGTATCGCCTGCTCGACGACGAG
AACCCCAACTCGTGCAGCGTCATGTGATTTTTTCACCGACACGTACGGCACAGCGCGGCT
CCGGCTAGCCACCGGCGGCAGAGTAGCTAAGAAGACGGCTTCGTAATATATAGAGACCTC
TCTGGTTGTAGGTAGAGTAGCTTGTTACCTCTTCCACGATTGGGAGGTCAAAGCTCTCCT
TGTTCCTCTTCTTTTTTATTATTGTTATTACTGTTCTAAATATATAGACCACGTAATTGC
GGTGGATTGACGGGGCGCACTCAGACGTGTCTGCAAGTCCTTATATTCTTACCACATTTG
TTTTCGATACGAGGGTTCGCCGACAACCTCAATATAAGAAAATGATATGGGCAATCCGGT
TGAATGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_62051.3	1432	0.0	4 - 1288	96	1261 / 1313	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_62051.1	1674	0.0	1 - 1226	95	1192 / 1254	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_62051.5	1288	0.0	1 - 1021	96	1008 / 1048	None	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_62051.2	1140	1e-83	4 - 214	93	198 / 212	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479
AK249008.1	1480	1e-79	958 - 1237	87	243 / 280	CUST_29135_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_62051.4	934	1e-78	6 - 198	94	183 / 194	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479
MLOC_39656.1	888	0.0	3 - 708	87	640 / 736	None	ABC04477 ABC04478 ABC04479
MLOC_72579.1	1443	0.0	212 - 1240	81	871 / 1077	CUST_29133_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_39656.2	894	0.0	1 - 658	86	595 / 688	None	ABC04477 ABC04478 ABC04479
MLOC_72579.2	1178	2e-172	22 - 940	80	770 / 967	None	ABC04477 ABC04478 ABC04479 ABC12510