barSeed - Barley Seed Development Database

Probe ABC04477

Source Contig ABC04477

barSeed

Links

Affymetrix Source Sequence (1250 bp)

>ABC04477 1250
GGCGCACTCCCATCCCATCCCATCCCATGGCGTCCGGACAACCGGCCGTGCAGACCTTTG
TTCTGAGGGTGTCCATCCACTGCCATGGCTGCAAGAAGAAGGTCCGCAAGGTGCTCAAGA
GCATCCAAGGCGTGCACGACGTGAAGGTGGATGCCCAGCAGCACAAGGTGCTGGTGACGG
GCACCGTGGACGCCGAGACGCTCGTCAAGACGCTCTACAAGTCAGGCAAGCAGGCCCTGC
CATGGCAACACACGCCTGCCAAGAACCCCGAGGCCCCGCCGCCGGCTGAGGTCAGCAGCA
ACGATGCTGCTGCGGCGGCGGACAAGAACCCGGCGGAGCCTGTGAAGGAGCCGCAGGCCG
ACGACAGCTCGGACAAGACGCCGGAGCAGGAGGAGACGGCCCCGGACAAGACGCCTGAGA
CGGAGAAGGAAGCAGAGTCTGAGAAGAAGGAGGATGAGAAAGAGGAGGCGAAAGCCATGA
AACCAAGCGCTGAGGCAAAGAAAGACGGCGGCGACGGCGAGGGCCCGGTGGCCGAGCCCA
AAGCAAAGGAGGACACAAAGGAGGCCGGCAATGACCAGGGCGAGGCCAAGGAGGAACAGA
GCAAGCCCAAGGATGCAGCTGCGGCGGACAGGTCCCTATCTCCGGCGCCGACGCCCGCGC
ACCAGGAGTTCAGCCCGTACAACGCGCCGCAGCCGGTGACGAGCTACCACACGGCGCATC
CGGCAGCGAGCGTGTCCTACTACGCGCCGCAGCCGGAGCAGGGCTACTCCACGCGGCAGC
AGCCATCGCAGCCGCAGCCCGGGTACTCCTCCCTCATGCAGCAGCAGCACCCACCGCCGG
CGCCGCAGCAGCAATGGTCGCCGTCGTACCTTTACATGCCGTACCCGCACGCGTCGCCGG
AGTCGTACTACCCGGATTACTACAGCCCGCCCGGGACGCACACGCCACCGCCACCTCCGC
CGCCGCTCCAGGACTCGTACCGCCTCTTCGACGACGAGAACCCCAACTCGTGCAGCGTCA
TGTGATTTCACCGAGACATGGACACGTGCGGCGCGGCGTAGCTCCAGCTAGCCACCGGCG
GCAGAGTAGCTAAGAAAAGGCGGCTTAAAGCTCTCCTTGACCAATCCATTTTTCCTCTTC
TTCTTTATTACTGTTATTACTGTTCTAAATATATAGAGCATGTAATTGTAATGAGATAAG
CCTTTACACGTAGCATAGCATCAATGAAATCTTCAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK249008.1	1480	0.0	966 - 1373	95	391 / 410	CUST_29135_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_39656.1	888	0.0	1 - 722	98	713 / 724	None	ABC04477 ABC04478 ABC04479
MLOC_62051.3	1432	0.0	196 - 1273	88	971 / 1104	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_39656.2	894	0.0	1 - 658	99	651 / 658	None	ABC04477 ABC04478 ABC04479
MLOC_62051.5	1288	0.0	45 - 1021	88	884 / 1001	None	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_62051.1	1674	0.0	259 - 1226	87	865 / 994	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_62051.2	1140	0.0	206 - 981	89	696 / 785	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479
MLOC_62051.4	934	0.0	191 - 789	88	538 / 608	CUST_24544_PI390587928	ABC04477 ABC04478 ABC04479
MLOC_72579.1	1443	0.0	207 - 1240	80	853 / 1068	CUST_29133_PI390587928	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_72579.2	1178	2e-147	22 - 940	78	745 / 953	None	ABC04477 ABC04478 ABC04479 ABC12510
MLOC_29.1	376	6e-127	104 - 376	97	266 / 275	CUST_29135_PI390587928	ABC04477