barSeed - Barley Seed Development Database

Probe CUST_24544_PI390587928

Source Contig U35_48273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_24544_PI390587928	Hv_44K_v2	CACGATTGGGAGGTCAAAGCTCTCCTTGTTCCTCTTCTTTTTTATTATTGTTATTACTGT	52	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.797	2.174	1.130	0.733	0.179	0.281
Raw	143.978	289.334	124.326	141.595	10.807	19.107

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62051.1	1674	2e-24	138 - 197	100	60 / 60	minus	ABC04477 ABC04478 ABC04479 ABC12510
MLOC	MLOC_62051.4	934	2e-24	63 - 122	100	60 / 60	minus	ABC04477 ABC04478 ABC04479
MLOC	MLOC_62051.2	1140	2e-24	75 - 134	100	60 / 60	minus	ABC04477 ABC04478 ABC04479
MLOC	MLOC_62051.3	1432	2e-24	75 - 134	100	60 / 60	minus	ABC04477 ABC04478 ABC04479 ABC12510
JLOC1	JLOC1_40590.1	1911	8e-25	1528 - 1587	100	60 / 60	plus
Harvest21	ABC04478	1403	3e-25	1175 - 1234	100	60 / 60	plus	ABC04478
Harvest35	U35_48273	346	3e-25	53 - 112	100	60 / 60	minus
Harvest35	U35_15822	1526	3e-25	1298 - 1357	100	60 / 60	plus

Contig Sequence (346 bp)

>U35_48273 346 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAATCCACCACAATTACATGCTCTATACATTTAGAACAGTAAT
AACAATAATAAAAAAGAAGAGGAACAAGGAGAGCTTTGACCTCCCAATCGTGGAAGAGGT
AACAAGCTACTCTAGCTACAACCAGAGAGGTCTCTATATATTACGAAGCCGTCTTCTTAG
CTACTCTGCCGCCGGTGGCTAGCCGGAGCCGCGCTGTGCCGTACGCCGTACGTGTCGGTG
AAAAAATCACATGACGCTGCACGAGTTGGGGTTCTCGTCGTCGAGCAGGCGATACGAGTC
CTGGAGCGGCGCCGGAGGTGGTGGCGGCGCGTGCGTCCCCGGCGGG

Homology of Contig U35_48273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None