barSeed - Barley Seed Development Database

Probe ABC03372

Source Contig ABC03372

barSeed

Links

Affymetrix Source Sequence (1743 bp)

>ABC03372 1743
GGCCTTCTCTTGCTCTAACACTCTAGCACACGCACATGGACTCGAGGGTGCCGATGGCTG
CGTGGTGGGTTTGTGGATTCCTCCCGCTCCTGGCGGTGGCCGCGGCCGCGGCCGCCGCGG
AGCCGCCGTCGGAGACTGGGCATGCCCCTGCCCCAGCGCCTGGCCCGTCAGCGCCGGGTG
AAGGGGTGACCAAGTGGGCCGTGCTCGTTGCGGGCTCCTCCGGCTACGGGAACTACCGGC
ACCAGGCCGATGTGTGCCATGCCTACCAGATCCTGAAGAAGGGAGGCCTCAAGGACGAGA
ACATTGTGGTGTTTATGTACGATGACATCGCCAACAACCCTGACAACCCAAGGCCTGGAA
TCGTCATCAACCATCCTAAAGGCAAAGATGTTTACGCGGGTGTTCCCAAGGACTACACCG
GTGACCAGGTCACTGCTGACAACTTCTATGCGGTTCTCCTGGGGAACAAAACTGCCGTTA
CCGGAGGGAGTAGGAAGGTGATAAACAGCAAACCAAATGATCACATCTTCATCTACTACA
CGGATCATGGGGCTGCTGGTTTACTTGGTATGCCCAACCCGCCAGATGTTTATGCCGACA
ACTTCATCGAAGTGCTACGGCAAAAACATGCTTCCAAAAGCTATTCGAAAATGATCATAT
ATGTTGAAGCGTGTGAAAGTGGCAGCATCTTTGAGGGTTTGCTTCCACAAGATCATAATA
TTTATGTTACAACGGCAGCAAATGCGGTAGAAGATAGCTGGGCAGCATACTGCCCTAAGA
TGGAAATACCACCTCCTCCTGAATATTGTACCTGTTTAGGTGATGCATACAGTGTTTCTT
GGATGGAAGACAGTGAAACTCAAGATCTAAAGAAGGAAAGCATCAAGCAGCAGTACGAGG
TGGTTAAAGCGAGAACGGCACCCCGAAACGAGTCAAGTATAGGCTCTCATGTCATGGAGT
ATGGTGACCAGACATTCAAGGAAGACATGCTTTTCCTCTATCAAGGTTTCGATCCTGCAA
AGTCAAGCATCAGAAACAGGCCGCTGCCTATGCCCAGCCTCAAGGGTGCAATCAATCAAA
GAGATGCCGATATTCTTTTCATGTGGAGGAAGTATGAGAAGTTAAATGCGGGATCGGAAG
AGAAGCAGAGGGCTCTCAGGGAGGTCAAAGAAACCGTGCTACACAGGAAGCATCTGGACA
GCAGAATCGATTTCATCGGGAAGCTTGTCTTTGGATTCGACAAGGGGCCTTCGGTGCTCC
AGGCTGCCAGAGGCTCTGGCCAGCCATTGGTCGACGATTGGGATTGTCTGAGGACGATGG
TGCGAGTGTTCGAGTCCCAGTGCGGATCACTCACTCAGTACGGCACGAGGCACATGAGGG
CGTTCGCAAACATCTGCAACAATGGTGTCTCCGAGGCCGAGATGAAGGAGGCGAGCATCA
GCGCTTGCAACGGCTACGACATGGGGAAGTGGAACCCTCTGGTTCTAGGGCACAGCCCTG
ATCCGCTTGCAGTGCTGTAGTATATGGGAGCAGTACCAAATGCTCCAGAGGTTCCTAGCT
AGGCCTCATATATGGTGTACATACAACATACACTGGTATAGATACCTCTAAAAGAAACCA
CGCAACAATGGCGCCCCATGTGTGTTGGGTTAATCAGTAGCTTATGGCCGTGCCTTTGTA
AACCAAATTTGACTGCAATCAATTGAAAGGCAATGATTATCATAAAAAAAAAAAAAAAAA
AAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_40573.1	1225	0.0	3 - 1225	93	1165 / 1248	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_64395.3	2219	0.0	1 - 1662	83	1412 / 1697	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_598.1	709	0.0	2 - 709	99	706 / 708	CUST_23966_PI390587928	ABC03366 ABC03369 ABC03372
MLOC_57439.1	1314	0.0	653 - 1314	98	651 / 662	CUST_23965_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_5275.1	853	0.0	2 - 829	90	758 / 839	None	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_5276.1	1017	0.0	1 - 852	89	759 / 852	CUST_23966_PI390587928	ABC03366 ABC03372
AK357911	2028	3e-126	393 - 904	84	431 / 514	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_64395.2	2213	0.0	24 - 763	82	636 / 772	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_57439.3	595	0.0	1 - 516	98	505 / 516	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
AK374437	618	0.0	2 - 612	93	574 / 618	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_57439.2	1282	1e-105	992 - 1203	99	211 / 212	CUST_23965_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_64395.1	1579	1e-95	868 - 1205	86	293 / 342	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_34998.1	505	4e-135	142 - 505	91	331 / 364	None	ABC03372
MLOC_57438.2	692	4e-60	566 - 692	100	127 / 127	CUST_23965_PI390587928	ABC03372