barSeed - Barley Seed Development Database

Probe ABC03366

Source Contig ABC03366

barSeed

Links

Affymetrix Source Sequence (1179 bp)

>ABC03366 1179
CGCGGATCATGGGGGTCCTGGTGTTCTTGGTATGCCTAACACCCCGTATCTTTATGCCGG
CGATTTCATCAGAGTGTTGCGAGAAAAGCATGCTTCCAAAAGCTATTCGAAAATGATTAT
ATATGTTTTAGCATGTGAAAGTGGCAGTATATTTGAGGGTTTATTGCCAGAAGATCTTAA
TATTTATGTTACAACGGCATCGAATGCCGTCGAAAATAGTTGGGGAGCATACTGCCCTGG
GATGAAATCATCACCTCCTACTGAATATGATACCTGTATAGGAGACATCTACAGTGTTTC
TTGGATGGAAGACAGTGAAACTCACAATCTAAAGAAGGAAACACTCAAGCAGCAGTACGA
GGTGGTTAAATCGAGAACATCAAAATCAAAGGAATTCGATAAGGGTTCTCATGTCATGGA
GTATGGTGATAAGACATTCAAGGATGAGAAGCTTTTCCATTATCAAGGTTTCAATCCTGC
AAATTCCAACGTTGCAAACAGGCTGCTTTTGCCCGACCTGGAGGGTGCAATCAATCAAAG
AGATGCTGACATTCTTTTCATGTGGAAGAGGTATGAGAAGTTAAATGGGGGGTCGGAAGA
GAAGCTGGGGGTTCTCAGGGAGATCAAAGAAACTGTGGCACACAGGAAGCACCTCGACAG
CAGTATTGATTTCATCGGGAAGCTTGTCTTTGGATTTGAAAACGGGCCTTCAGTGCTTGA
GGCTGCTAGAAGCTCTGGTCAACCATTAGTCGACGATTGGGATTGTCTAAAGAGGATGGT
GCGAGTTTTCGAATCCCAATGTGGATCACTTACTCAGTATGGCATGAAACACATGAGAGC
ATTTGCAAACATATGCAACAATGGCGTCTCTGAGGCCCAAATGAGGGAGGCAAGCATCAG
TGCTTGCGGCGGTTATAACTTGGCCAAGTGGAGCCCACTGGATCTAGGGCACAGTGCCTG
ATCCGCTGCACTGCAGTACATGGGAACAAATAGAAAATGCTCCAGAGGTTCCTAGACCTC
ATATGGTGTACATACATGCACTAATTTACAAGAAACCACCCAACAATGCGCCCCGTGTGG
GCGTTGGGTTAATCAGTAGTTTGTGGTCGTGCCTTTGTAAGTTTCACCGCAATCAATTGA
AAGGCAAATACTCCTAATTAAAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK357911	2028	0.0	902 - 2028	99	1125 / 1127	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_64395.3	2219	0.0	1 - 1111	99	1107 / 1112	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_64395.2	2213	0.0	868 - 1233	99	363 / 366	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_64395.1	1579	1e-172	868 - 1205	99	335 / 338	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_40573.1	1225	0.0	135 - 1225	83	927 / 1117	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_5275.1	853	0.0	7 - 829	84	697 / 827	None	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_57439.1	1314	2e-146	665 - 1314	82	536 / 653	CUST_23965_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
AK374437	618	3e-139	2 - 607	82	502 / 609	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_57439.3	595	4e-118	33 - 515	83	403 / 484	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_5276.1	1017	6e-67	1 - 295	82	244 / 296	CUST_23966_PI390587928	ABC03366 ABC03372
MLOC_598.1	709	4e-64	442 - 707	84	223 / 267	CUST_23966_PI390587928	ABC03366 ABC03369 ABC03372
MLOC_57439.2	1282	1e-63	992 - 1202	88	185 / 211	CUST_23965_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841