- Probe CUST_22576_PI390587928
- Source Contig U35_9135
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22576_PI390587928 | Hv_44K_v2 | ATGTTCGATGATATCGCCAAAAACCACCTCAATCCAAGGCCTGGAGTCATCATCAACCAT | 373 | GeneList: plum1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.063 | 0.154 | 0.805 | 1.654 | 1.608 | 2.046 |
| Raw | 15.345 | 52.859 | 266.373 | 767.268 | 295.382 | 402.677 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK357911 | 2028 | 2e-24 | 720 - 779 | 100 | 60 / 60 | plus | ABC03366 ABC03369 ABC03371 ABC03372 |
| MLOC | MLOC_64395.2 | 2213 | 2e-24 | 1398 - 1457 | 100 | 60 / 60 | minus | ABC03366 ABC03369 ABC03371 ABC03372 |
| MLOC | MLOC_64395.1 | 1579 | 2e-24 | 1452 - 1511 | 100 | 60 / 60 | minus | ABC03366 ABC03369 ABC03371 ABC03372 |
| MLOC | MLOC_64395.3 | 2219 | 2e-24 | 1276 - 1335 | 100 | 60 / 60 | minus | ABC03366 ABC03369 ABC03371 ABC03372 |
| JLOC1 | JLOC1_42284.2 | 2324 | 8e-25 | 741 - 800 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42284.1 | 2421 | 8e-25 | 717 - 776 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03367 | 576 | 3e-25 | 374 - 433 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9135 | 577 | 3e-25 | 374 - 433 | 100 | 60 / 60 | plus |
Contig Sequence (577 bp)
>U35_9135 577 Hv_44K_v2 GCGCCGCCGGCACGACCACGCCTCACTCTCTGCTTTCTCTGTCTCTCTCTAGCACGCGCA CATGAACTCGAGGGTGGCGATGCGTGCGTGGTGGGTTTGTGGATTCCTCCCGCTGCTGGC GGTGGCCGCGGATCGGGCGAAGGCGAGCTGGGAGCCGCTGATTCGGCTGCCGACCGACAA GGGTGCTGCTGCCCCTGCCCCTGCCCCTGCCCCTGCCGCTGCCGCGCCGGTGGCGGAGGA AGGGGTGACCAAGTGGGCCGTGCTCGTTGCCGGCTCCTCCGGCTACGGGAACTACCGGCA CCAGGCCGATGTGTGTCATGCCTACCAGATCCTGAGGCAGGGGGGCCTCAAGGAGGAGAA CATTGTGGTGTTTATGTTCGATGATATCGCCAAAAACCACCTCAATCCAAGGCCTGGAGT CATCATCAACCATCCTAAAGGCGAAGATGTTTACGCCGGTGTTCCCAAGGACTACACTGG TGGCCAGGTCACCGCTAAAAACTTCTTTGCAGTTCTATTGGGGAACAAAACCGCGGTTAC TGGAGGGAGTGGGAAGGTGATAAACAGCAAACCAAAG
Homology of Contig U35_9135 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g45470.1 | 498 | 4e-71 | protein|vacuolar-processing enzyme precursor, putative, expressed |
| Brachypodium v1_2 | Bradi5g16960.1 | 489 | 4e-83 | |
| Arabidopsis v10 | AT1G62710.1 | 486 | 1e-58 | | Symbols: BETA-VPE, BETAVPE | beta vacuolar processing enzyme | chr1:23224070-23226857 REVERSE LENGTH=486 |