barSeed - Barley Seed Development Database

Probe ABC03371

Source Contig ABC03371

barSeed

Links

Affymetrix Source Sequence (1053 bp)

>ABC03371 1053
GCAGCATACTGCCCTGGGATGGAAATACCACCTCCTTCTGAATATTACACCTGTTTAGGT
GACGCATACAGTGTTTCTTGGATGGAAGACAGTGAAACTCACAATCTAAAGAAGGAAACA
ATCAAGCAGCAGTACGAGGTGGTTAAAGCGAGAACGGCACCCCGGAACAAGTCCAGTATA
GGCTCTCATGTCATGGAGTATGGTGACAAGACTTTCAAGGATGAGATGCTTTTCCTTTAT
CAAGGATTCGATCCTGCAAAGTCAAGCATCACAAACAGGCTGCCTTTGCCCATCCTGAAG
GGTGCAATCAATCAAAGAGATGCCGATGTTCTTTTCATGTGGAAGAAGTATGAGCAGTTA
AACGGGGGATCGGAAGAGAAGCATAGGGCTCTCAGGGACATCAAAGAAACTGTGCTACAC
AGGAAGCATCTGGACAGCAGTATCGATTTCATCGGGAAGCTTGTCTTTGGATTCGACAAG
GGGCCTTCGATGCTCCAGGCTGCTAGAGGCTCTGGCCAGCCATTGGTCGACGATTGGGAT
TGTCTGAAGAGGATGGTTCGAGTGTTCGAGTCCCAGTGCGGATCACTCACTCAGTACGGC
ATGAAACATATGAGGGCGTTCGCAAACATCTGCAACAATGGAGTCCCCGAGGCCGAGATG
AAGGAGGCAAGCATCAACGCTTGTGACGGTTACGACATGGGGAGGTGGAACCCACTGGTT
CTAGGCCACAGCGCATGATCCGCTGCACTGAAGTACATGGGAGCAGTAACAAATGCTCCA
GAGGTTCCTAGCTAGACCTCATATATAGTGTACATACTACCTACATACGTTGGTATACAT
GCAAGAAACCACCCAACGATGCGCCCCATGTGGTGTTGGGTTAATCAGTAGCCTATGCTC
CTGCCTTTGTAAATCAACTTTGACTGCAACCAATTGAAAGGCAATTATTATATTATGTAA
AAAAAATGTGAATAACTTTGCAATGTTGCATGACAGTACCATCTTTAAAAGATATGCTTG
ACAGTGCCATCTGATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_5275.1	853	0.0	1 - 829	99	826 / 829	None	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_40573.1	1225	0.0	356 - 1225	89	800 / 894	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
AK357911	2028	0.0	1099 - 2020	84	793 / 946	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_64395.3	2219	0.0	14 - 886	84	753 / 892	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_57439.1	1314	0.0	585 - 1314	87	650 / 744	CUST_23965_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
AK374437	618	0.0	2 - 618	89	554 / 622	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_64395.2	2213	0.0	24 - 763	84	639 / 762	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_64395.1	1579	0.0	24 - 763	84	639 / 762	CUST_22576_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372
MLOC_57439.3	595	0.0	26 - 516	91	447 / 491	None	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_57439.2	1282	3e-89	987 - 1203	94	206 / 219	CUST_23965_PI390587928	ABC03366 ABC03369 ABC03371 ABC03372 ABC52841
MLOC_5274.4	815	1e-93	629 - 815	100	187 / 187	None	ABC03371