barSeed - Barley Seed Development Database

Probe ABC02873

Source Contig ABC02873

barSeed

Links

Affymetrix Source Sequence (1283 bp)

>ABC02873 1283
CTCCGCACTGCCCACTCGTCAGATCCACACACACACCACAGCGCGCGGCATGGGCTCCCT
CCCCTCCCTCGCCGTGCTCGCGGCGCTTCTCTGCTTCCTGGCCGTCACCGGCGCCGTGGA
CCTCAACGCCACCGACGCCTCCCCCTTCGACGTCGACCTCAACGTCACCGACGCCACCAA
GTACTGGGGACCCTGGACCCCGGCCAGGGCGACCTGGTACGGCCAGCCCAATGGCGCCGG
CCCCGACGACAACGGTGGTGCCTGCGGCTTCAAGCACACCAACCAGTACCCGTTCGCGTC
CATGACCTCCTGCGGCAACCAGCCATTGTTCAAGGACGGCAAGGGATGCGGCTCATGCTA
CAAGATCAGATGCAGGAAGGACCAATCCTGCTCCGGCAGGACGGAGACGGTGATCATCAC
CGACATGAACTACTACCCGGTGGCGCCCTACCACTTCGACCTCAGCGGCACGGCGTTCGG
CAGGCTCGCAAAGCCCGGGCTCAACGACAGGCTCCGCCACTCCGGCATCATCGACATCGA
GTTCACACGGGTGCCGTGCGAGTTCCCGGGGCTCAAGATCGGGTTCCACGTGGAGGAGTA
CTCGAACCCCGTCTACTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGT
GCAGGTGGACCTCATGGAGTCGCGGGGGCCGGGCGGCGGAAAGTGGACGAGGATGAGGGA
GTCGTGGGGCTCCGTCTGGCGCCTCGACTCCAACCACCGCCTCCAGGCGCCATTCTCCAT
CCGCATCCGCAACGAGTCCGGCAAGACGCTCGTCGCCAACAAGGTCATCCCGGCCAACTG
GAGGCCCAACACCTTCTACCGCTCCTTCGTGCAGTACAGCTGAAGTCCCTTTACCCGAGT
ACTGGTAATGCTACTACGCAGCTAGCTGCTACGGTCAAGTCATTGGGAGTGTACGGTCCG
TCCTTGCGTCGCGCTGAGTCGTTGTAAACTGTATCTGGTTGGGTGGGTGTGTGGTGTCGG
TGCGTCTTTCTAGGTGAGAAAAAGGTTTGGTTGGGTGCGGGTGCGGGTGCGGGTGCGTCC
GTGGAGTCGGGTCTCGGTCTGTAGGGAAGTGAGAGATGAGTCGTGTATTGGCAAATGGGA
AAAGGGCTGTGTGGGAAAATGGAGGAGGCAGGCGTACAAGATACGCTCTCCCGCCCACTC
TCGCCTTTTATAATTTATATAGTATCATTCAAGGCGGTGATATTAATCGAACAGTATATT
GTTACTACTAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_12906.3	1315	0.0	17 - 1279	99	1261 / 1270	CUST_22051_PI390587928 CUST_22052_PI390587928 CUST_22049_PI390587928	ABC02873 ABC02876 ABC02877
MLOC_12906.1	1644	0.0	316 - 1592	99	1264 / 1278	CUST_22051_PI390587928 CUST_22052_PI390587928 CUST_22049_PI390587928	ABC02873 ABC02876 ABC02877
MLOC_12906.2	1770	2e-172	275 - 646	97	359 / 372	CUST_22052_PI390587928	ABC02873 ABC02876 ABC02877
AK367371	1584	0.0	446 - 1130	87	593 / 685	CUST_22053_PI390587928 CUST_22046_PI390587928	ABC02873 ABC02876 ABC08009
MLOC_52820.2	1611	0.0	494 - 1181	86	591 / 689	CUST_22053_PI390587928	ABC02873 ABC02876 ABC08009
MLOC_52820.1	1404	0.0	349 - 1012	86	571 / 665	None	ABC02873 ABC02876 ABC08009
MLOC_70189.1	1340	0.0	190 - 863	84	573 / 684	CUST_478_PI415269222 CUST_22050_PI390587928	ABC02873 ABC02877
MLOC_67870.2	1605	4e-119	185 - 866	78	538 / 686	CUST_22071_PI390587928	ABC02873 ABC02877 ABC08009
MLOC_74834.1	1369	4e-104	235 - 910	77	532 / 688	None	ABC02873 ABC02877 ABC07394 ABC08009
AK366592	875	2e-102	9 - 639	78	494 / 635	CUST_22071_PI390587928	ABC02873 ABC02877 ABC08009
MLOC_67870.1	1495	3e-80	185 - 682	78	389 / 499	CUST_22071_PI390587928	ABC02873 ABC02877 ABC08009