barSeed - Barley Seed Development Database

Probe ABC08009

Source Contig ABC08009

barSeed

Links

Affymetrix Source Sequence (1279 bp)

>ABC08009 1279
CAATTCCAGCTCCAACAGCACCAATGTCGACGCCGGCTGGCTCGACGCCAGGGCGACCTG
GTACGGCGCGCCCAATGGCGCCGGGCCAGACGACAACGGCGGCGCCTGCGGGTTCAAGAA
CGTCAACCTGCCACCCTTCTCCGCCATGACCTCCTGCGGCAACGAGCCGCTCTTCAAGGA
CGGCAAGGGCTGCGGCTCCTGCTACCAGATACGGTGCGTGTCGGCGGGCCACCCGGCGTG
CTCCGGCGTGCCGGAGACGGTGATCATCACGGACATGAACTACTACCCGGTGTCCCGCTT
CCACTTCGACCTCAGCGGCACCGCCTTCGGCGCCATGGCCAAGGACGGCCGCAACGAAGA
GCTCCGGCACGCCGGCATCATCGACATGCAGTTCAGAAGGGTGCCGTGCCAGTACCCGGG
GCTGACGGTGACGTTCCACGTGCAGCACGGTTCCAACCCCTACTACCTGGCCATCCTGGT
GGAGTACGAGAACGGCGACGGCGACGTGGACCAGGTGGACATGATGCAGTCGCGGCCGGA
CGCCGCCGCCGGCGAAGGCGGGATGGCGCCGACGGGGGAGTGGGTGCCCATGACCGAGTC
CTGGGGCTCCATCTGGCGGATGGACACCCGGCGCCCCATGCAGGGCCCCTTCTCGCTGCG
CATCACCAACGAGTCCGGCAAGACGCTCGTCGCCGACCAGGTCATCCCCGCCGACTGGGA
GCCCAACGAGATCTACAGCTCCATCATCCAGTTCGACTAACCATTTTCACTTACCTTGAT
CCACCATATATACACACCCACAAAATATGTATGTGTGTGATGATGCATGCGTGCGTGGCG
CGGGTGATTTTAGTGCCTTACGTAGCAGGGTGAGACGTCGCCTGTGACGTCCGGTGAGTA
GCGTCGTCGTCCATCGTGTACTCCAGTCCTGTGCTTAGCCTTATACTACTACATGCATGT
ATCACTTTCATTATAATGTTGGCATCTACTCCAATTGTCCATCCACCGCTCTAGCTATCT
ACCTGTGCCTATGTTTAGTAGTTTTTCTACGTTGATCTCTTGTCCATTTGGCATCTTCGA
AAACGGATATATAGTATCCCGACAACTGCATCAAGCAATGCACACAGTCATTTTCTTGAA
TGAAAACAGAGTTCAAGTCATCGACGACTACCAAAAGAGGAATACAGATAGAATTTAAAA
CATGACCATGTCTGGTGATATATATATACTTATTACATGGCTTGCTGGTTAATCATTATT
GCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_81936.1	989	0.0	5 - 989	99	984 / 985	None	ABC02876 ABC07394 ABC08009
AK376221	1382	0.0	380 - 1382	99	996 / 1003	None	ABC02876 ABC07394 ABC08009
MLOC_81936.3	778	0.0	171 - 778	100	608 / 608	None	ABC08009
MLOC_81936.2	1531	0.0	3 - 362	100	360 / 360	None	ABC07394 ABC08009
MLOC_61067.1	1027	0.0	165 - 879	85	612 / 718	CUST_34295_PI390587928	ABC08009 ABC45068
AK374643	1041	0.0	117 - 831	85	610 / 718	CUST_34294_PI390587928 CUST_34295_PI390587928 CUST_34296_PI390587928	ABC08009 ABC45068
MLOC_67870.2	1605	0.0	181 - 878	84	607 / 722	CUST_22071_PI390587928	ABC02873 ABC02877 ABC08009
MLOC_74834.1	1369	4e-178	231 - 923	83	604 / 727	None	ABC02873 ABC02877 ABC07394 ABC08009
MLOC_18468.1	1117	1e-173	453 - 1113	83	578 / 693	None	ABC02876 ABC08009
AK366592	875	3e-169	12 - 643	84	549 / 656	CUST_22071_PI390587928	ABC02873 ABC02877 ABC08009
MLOC_71096.1	1251	3e-160	454 - 940	88	429 / 489	None	ABC02876 ABC08009
MLOC_67870.1	1495	8e-136	181 - 680	84	436 / 518	CUST_22071_PI390587928	ABC02873 ABC02877 ABC08009
AK367371	1584	1e-134	445 - 1124	80	565 / 709	CUST_22053_PI390587928 CUST_22046_PI390587928	ABC02873 ABC02876 ABC08009
MLOC_68704.1	716	8e-131	4 - 488	84	423 / 503	None	ABC02876 ABC08009
MLOC_52820.2	1611	4e-129	493 - 1175	79	567 / 715	CUST_22053_PI390587928	ABC02873 ABC02876 ABC08009
MLOC_52820.1	1404	4e-119	345 - 1006	79	547 / 694	None	ABC02873 ABC02876 ABC08009
MLOC_40833.1	645	1e-114	1 - 357	88	315 / 359	None	ABC08009
MLOC_68704.2	686	1e-108	3 - 474	82	412 / 503	None	ABC08009
MLOC_10050.1	1527	1e-108	489 - 960	82	391 / 478	CUST_22047_PI390587928	ABC07394 ABC08009
MLOC_21022.1	622	8e-101	1 - 327	87	289 / 331	None	ABC08009
MLOC_21022.2	700	6e-92	1 - 300	87	267 / 306	None	ABC08009
MLOC_36439.1	397	3e-70	1 - 397	79	314 / 398	None	ABC08009
MLOC_26395.1	660	3e-70	156 - 615	77	375 / 484	None	ABC08009
MLOC_68704.3	888	1e-54	1 - 138	95	131 / 138	CUST_8278_PI390587928	ABC08009
MLOC_10050.3	526	1e-53	222 - 387	90	149 / 166	None	ABC07394 ABC08009