barSeed - Barley Seed Development Database

Probe ABC02876

Source Contig ABC02876

barSeed

Links

Affymetrix Source Sequence (1457 bp)

>ABC02876 1457
GTCTGGACCACCCCTCCTCCTCCTCGCACCCAGCCAAACCCAGCCAACTGACCGCACGCT
ACAAGCCGAGAGTCAGCCGGTAGTGACACTAGCGAGCGAGTGAGTGGGTGAGGAGAATGG
GGAGGCCGCAGCTCACGCTCCTGTCGGCGCCGGCGCCGGCGCTGGTGCTCGCCGTGCTGC
TGCTCTCCTCCTCCTACTCCCTCCACAGTGCCGAGGCGGCGGAGGAGGAGGCGAGTGCCG
GCCTGGACACGGGCGTGGCCGGCGACCCCGGCCTGCTCAACGCCACCGCCGTGTCCATCG
GGCAGTCGGGCGTCGCCCGGGCCACCTGGTACGGCGCGCCCAACGGCGCCGGCCCCTACG
ACAACGGCGGCGCTTGCGGGTTCAAGAACGTGAACCGGTACCCGTTCATGGCCATGACCT
CCTGCGGCAACCAGCCGCTGTTCAAGGACGGCAAGGGCTGCGGCGCATGCTACAAGATCA
AGTGCACGAAGCACAAGGCGTGCTCCGGGCGGCAGGAGACGGTGATGATCACGGACATGA
ACTACTACCCGGTGGCGCCCTACCACTTCGACCTCAGCGGCACCGCCTTCGGCAAGCTCG
CCAAGCCCGGCCGCAACGACGAGCTCCGACACGCCGGCATCATCGACATCCAGTTCACCA
GGGTGGCGTGCGAGTTCCCGGGGCTGAAGGTGGGGTTCCACGTGGAGGAGGGGTCCAACG
CGGTGTACATGGCGATCCTGGTGGAGTACGAGAACGGCGACGGCGACGTGGTGCAGGTCG
ACCTCATGGAGTCCGGCCGCGGACGGCGCGGCGGCGGGCGGTGGACGCGGATGCGCGAGT
CGTGGGGATCCATCTGGCGCCTCGACTCCAACCATCGTCTCCAGGCGCCATTCTCCATCC
GCATCCGCAACGAGTCCGGCAAGACGCTCGTCGCCCGCAACGTCATCCCCAAGAACTGGA
GGCCCAACACCTTCTACCGCTCCATCGTCCAGTACAGCTAGATAAGATGGCCATCGTCAG
TCATCGTCTTCCTCCGTCGAACCAACCAACCAGCAAGAGAGCTCTGTTTTGGCGGGAGTT
TTAATCAATCAATCAATTAATTTCTGTGGGAAATAGAGGAGGCGACCTAGCGTGTTCGTC
CATGCCCGGAGAAATAAGCCGGAGCGTGTGCACGCTAGCTCTCCCGCCCACTTTGTTATT
GCTATTAGTCGTCGTCTTCTTCGTCTTCGTCTTGGTGCTATTGATTGTTTCAGACTTTGC
GGATGCATCTGCCGCATGCAATGCCAACCCTCTACGAATATGTAACTGCATGCTCTGTAT
CCATTCATGAAGCATGATCGCATTTATGTACTACTACTAGTATCTGTGAATCATGCATCA
TCCATGATGTATCGGATCGGACCGAGCAAGGCTATGTATAAATGTTCCCGGCTTTTAATT
AAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_52820.2	1611	0.0	186 - 1611	99	1422 / 1427	CUST_22053_PI390587928	ABC02873 ABC02876 ABC08009
AK367371	1584	0.0	138 - 1571	99	1422 / 1434	CUST_22053_PI390587928 CUST_22046_PI390587928	ABC02873 ABC02876 ABC08009
MLOC_52820.1	1404	7e-67	216 - 363	98	145 / 148	None	ABC02873 ABC02876 ABC08009
MLOC_12906.3	1315	0.0	219 - 897	86	592 / 685	CUST_22051_PI390587928 CUST_22052_PI390587928 CUST_22049_PI390587928	ABC02873 ABC02876 ABC02877
MLOC_12906.1	1644	0.0	526 - 1204	86	591 / 685	CUST_22051_PI390587928 CUST_22052_PI390587928 CUST_22049_PI390587928	ABC02873 ABC02876 ABC02877
MLOC_12906.2	1770	2e-161	899 - 1417	86	454 / 525	CUST_22052_PI390587928	ABC02873 ABC02876 ABC02877
AK376221	1382	1e-134	428 - 1134	80	567 / 711	None	ABC02876 ABC07394 ABC08009
MLOC_81936.1	989	1e-134	14 - 720	80	567 / 711	None	ABC02876 ABC07394 ABC08009
MLOC_18468.1	1117	4e-124	465 - 1098	80	512 / 643	None	ABC02876 ABC08009
MLOC_71096.1	1251	5e-118	252 - 922	79	538 / 685	None	ABC02876 ABC08009
MLOC_68704.1	716	1e-94	4 - 479	80	385 / 480	None	ABC02876 ABC08009