barSeed - Barley Seed Development Database

Probe CUST_22049_PI390587928

Source Contig U35_14784

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22049_PI390587928	Hv_44K_v2	CCCACTCTCGCCTTTTATAATTTATATAGTATCATTCAAGGCGGTGATATTAATCGAAAG	1230	GeneList: yellow MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.687	1.631	1.100	0.972	0.323	0.332
Raw	1177.785	1184.601	682.624	961.398	110.712	125.660

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12906.3	1315	2e-24	1204 - 1263	100	60 / 60	plus	ABC02873 ABC02876 ABC02877
MLOC	MLOC_12906.1	1644	2e-24	1517 - 1576	100	60 / 60	plus	ABC02873 ABC02876 ABC02877
JLOC1	JLOC1_8688.2	1737	8e-25	1504 - 1563	100	60 / 60	plus
JLOC1	JLOC1_8688.1	1587	8e-25	1354 - 1413	100	60 / 60	plus
Harvest21	ABC02874	559	3e-25	468 - 527	100	60 / 60	plus
Harvest21	ABC02873	1283	4e-24	1194 - 1251	100	58 / 58	plus	ABC02873
Harvest35	U35_14784	1355	3e-25	1231 - 1290	100	60 / 60	plus
Harvest35	U35_14782	664	4e-24	33 - 90	100	58 / 58	minus

Contig Sequence (1355 bp)

>U35_14784 1355 Hv_44K_v2
TTTTTCACTGGGGCCTACTGCCACTCCCACACAGGAACCATCACTCCGCACTGCCCACTC
GTCAGATCCACACACACACCACAGCGCGCGGCATGGGCTCCCTCCCCTCCCTCGCCGTGC
TCGCGGCGCTTCTCTGCTTCCTGGCCGTCACCGGCGCCGTGGACCTCAACGCCACCGACG
CCTCCCCCTTCGACGTCGACCTCAACGTCACCGACGCCACCAAGTACTGGGGACCCTGGA
CCCCGGCCAGGGCGACCTGGTACGGCCAGCCCAATGGCGCCGGCCCCGACGACAACGGTG
GTGCCTGCGGCTTCAAGCACACCAACCAGTACCCGTTCGCGTCCATGACCTCCTGCGGCA
ACCAGCCATTGTTCAAGGACGGCAAGGGATGCGGCTCATGCTACAAGATCAGATGCAGGA
AGGACCAATCCTGCTCCGGCAGGACGGAGACGGTGATCATCACCGACATGAACTACTACC
CGGTGGCGCCCTACCACTTCGACCTCAGCGGCACAGCGTTCGGCAGGCTCGCAAAGCCCG
GGCTCAACGACAGGCTCCGCCACTCCGGCATCATCGACATCGAGTTCACACGGGTGCCGT
GCGAGTTCCCGGGGCTCAAGATCGGGTTCCACGTGGAGGAGTACTCGAACCCCGTCTACT
TCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTCATGG
AGTCGCGGGGGCCGGGCGGCGGAAAGTGGACGAGGATGAGGGAGTCGTGGGGCTCCGTCT
GGCGCCTCGACTCCAACCACCGCCTCCAGGCGCCATTCTCCATCCGCATCCGCAACGAGT
CCGGCAAGACGCTCGTCGCCAACAAGGTCATCCCGGCCAACTGGAGGCCCAACACCTTCT
ACCGCTCCTTCGTGCAGTACAGCTGAAGTCCCTTTACCCGAGTACTGGTAATGCTACTAC
GCAGCTAGCTGCTACGGTCAAGTCATTGGGAGTGTACGGTCCGTCCTTGCGTCGCGCTGA
GTCGTTGTAAACTGTATCTGGTTGGGTGGGTGTGTGGTGTCGGTGCGTCTTTCTAGGTGA
GAAAAAGGTTTGGTTGGGTGCGGGTGCGGGTGCGTCCGTGGAGTTGGGTCTCGGTCTGTA
GGGAAGTGAGAGATGAGTCGTGTATTGGCAAATGGGAAAAGGGCTGTGTGGGAAAATGGA
GGAGGCAGGCGTACAAGATACGCTCTCCCGCCCACTCTCGCCTTTTATAATTTATATAGT
ATCATTCAAGGCGGTGATATTAATCGAAAGTATATTGTTACTACTACTAAAAAAAAAAAA
AAAAAATGTTTGTAGTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14784 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40730.1	287	1e-172	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g33160.1	285	4e-176
Arabidopsis v10	AT1G65680.1	273	1e-62	\| Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 \| expansin B2 \| chr1:24427266-24428399 FORWARD LENGTH=273