barSeed - Barley Seed Development Database

Probe CUST_22050_PI390587928

Source Contig U35_14783

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22050_PI390587928	Hv_44K_v2	ATCACGGATCGTTTTGCATGGGTACTACCGAGGATGTTTTTGATTAAGGTGTTGGGTCGT	972	GeneList: grey60 MasterList: Reassembly_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.602	3.063	1.269	0.708	0.179	0.264
Raw	1003.119	1217.310	514.410	469.844	38.873	65.773

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70189.1	1340	2e-24	69 - 128	100	60 / 60	minus	ABC02873 ABC02877
JLOC1	JLOC1_46571.1	1357	8e-25	1051 - 1110	100	60 / 60	plus
Harvest21	ABC02877	1164	3e-25	938 - 997	100	60 / 60	plus	ABC02877
Harvest35	U35_14783	1201	3e-25	973 - 1032	100	60 / 60	plus

Contig Sequence (1201 bp)

>U35_14783 1201 Hv_44K_v2
TCGAGCACTGTTGGCCTATTGGATCAAAGCATAGCTCAGCCTTCCAACCCGGCCTGGTCA
GTGCGCTGGTAAACTACCCCCACAAGCCTGAAGAAGCAGCGTTGCTTTGACATGGCTCCT
CTCTCGTCTAAGGCCGTTGCACTCGTTGCACTGTCCTCCCTCCTCGTCACCTACGCCGCT
GCCGGCGCCGGGACCTTCAACGATTCCGCCTTCACCGCCGACCCCAACTGGGAGGACGCC
AGGGCCACCTGGTACGGCGCGCCCACGGGTGCCGGCCCCATGGACGACGGTGGTGCGTGC
GGGTTCAAGAACACCAACCAGTACCCCTTCTCCTCCATGACATCGTGCGGCAACGAGCCC
ATCTTCAAGGATGGCAAGGGATGCGGCTCCTGCTACCAGATACGGTGCACCAACGACCAG
TCCTGCTCCGGCAACCCGGAGACGGTGGTCATCACCGACATGAACTACTACCCGGTTGCC
AAGTACCACTTCGACCTGAGTGGCACCGCGTTCGGCGCCATGGCCAAGCCCGGCCTCAGC
GAGAAGCTCCGGCACTCCGGCATCATCGACATCCAGTTCAAGAGAGTGCCGTGCGAGTTC
CCTGGTCTCAAGGTGACCTTCCACGTGGAGCAGGGGTCGAACCCGGTGTACTTCGCCGTG
CTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTCATGGAGGCCAAC
TCCGGTACGTGGACGCCGATGCGCGAGTCGTGGGGATCAATCTGGCGGCTGGACTCCGGC
CACCGCCTCCAGGCGCCCTTCTCCATGCGCATCACCAACGAGTCCGGCAAGACGCTGGTG
GCCGACAAGGTCATCCCGGCCAACTGGGCGCCCAGCACCTTCTACCGCTCCATCGTCCAG
TACAGCTGAAGCTGCTGAACTCATCATCATTTGGAATCATATGCATACATTGGCTAGATT
TGGTATCGTACTATCACGGATCGTTTTGCATGGGTACTACCGAGGATGTTTTTGATTAAG
GTGTTGGGTCGTCGGGTGTCATGTAGGCGTCGTCGTGCATGTGTGTCTTGAATACGTCGG
TGGGCTATGGAGGAGAGGCACTTTTGCATGTGCTCTCCCGCGCCCACCGTCACTGTACCA
GTGTGTAAGCAGATCATAAGTTATTACTGTTTGTGTGTGCTTAAAAAAAAAAAAAAAAAA
A

Homology of Contig U35_14783 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g40720.1	269	9e-158	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi3g33150.1	272	2e-165
Arabidopsis v10	AT1G65680.1	273	4e-75	\| Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 \| expansin B2 \| chr1:24427266-24428399 FORWARD LENGTH=273