barSeed - Barley Seed Development Database

Probe ABC02318

Source Contig ABC02318

barSeed

Links

Affymetrix Source Sequence (1115 bp)

>ABC02318 1115
CTCGGCCTCTCCCTCCCCACATCGACCGACCCCCCCTCGTTCCGTCTCTCCCACCGACAC
CCAGCCCCACGCGCTCCCTCCTCTCGCCTCCCTCCGATCCGTGGTGGACTTCCCGGGCTT
CGAGGCGCACCTGATGGACTTCCCGGACGCGGCGGAGATGCACCCGCACGCGGACGCGGG
CGAGCGGCTGCACGACGCGGAGATCCGGTTCCGCGGCGAGATGCAGGGCCCTGAGAGCGT
CGCCTTCGACCCGTGCGGCCGCGTGCCGTACACGGGCGTTGCCGACGGCAGGGTCCTCGT
CTGGGACGGCGTCCGGAAACAAGGGGAGGGCGATCGGCGTCGGGATGCTGAGGCGGCGGC
TGACCTCCCTTCTTCTCCGATCCCCGTGCTCCTCCTCCGTTGCTTCGCCCTACCACCAGC
AGCAGCACCGCCTCCTCCACCCCACCCACGCCGAGTGACAACTCTGGCTTCAGCAGAGCA
GCACAACTGCCTGCAGCTCAAGATGAAGTATGTTGAGTTCATTGTTAGCACTCCTAGAAT
TCTTGATGCTGTGTTGGCGACGAACGAATATAAGCATCTGGAGGCAAGTTGTCCTATGGG
GCAGAAAGGGTTGAAGGGTTTTTGATCTGAGTCACTCATGTCTTTTGAAGTCAGCGAGGG
ATCCCCTTATTTCCTCTCTTGCTACTTCTGGTTCATATATTGCATAAAATTCGGAGATTT
CACTTGATACAAGTGGAACATCTGGAGTTTTGTGCGAATATTTCCTATCATGTGAATGAG
TGGTAGTTGGATTAATTGGCAAACTCAAACTTCTCTCATCTGAGTTCAGAAACATTTGTC
GCTTCAAGATTTCCGCCATGGATTGCTTGTTTTTGTGCCTTGTTTCTATTCTTGATCTGT
ATCTTGTAGCTCTTAAAAATATGGTTGTTTCTTCTACAGGACCTCTAGGCCTAAGAAAGT
TGAAGTGCGAAGTCTTGAAGCCAATTGTGTGAAGCTCTACTTATCTAAGAATGCATATTA
TATATTGTAATAATAGGCATATCTGCTTTGTAACAGATTGGAAAAATTGTAATATTCTAC
CTTCGTGTTAATTTGATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK359368	1072	0.0	2 - 1072	100	1071 / 1071	CUST_5513_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_24911.1	2220	0.0	1559 - 2177	99	618 / 619	None	ABC02318
AK357043	2449	5e-147	2121 - 2440	96	308 / 320	CUST_42067_PI390587928	ABC02318 ABC02324 ABC06221 ABC14241 ABC48970
AK366204	2659	1e-138	2308 - 2634	94	311 / 331	CUST_14095_PI390587928 CUST_42067_PI390587928 CUST_9543_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_32044.1	306	5e-137	10 - 304	97	285 / 295	None	ABC02318 ABC02324 ABC14241
MLOC_30567.1	402	1e-132	1 - 332	92	308 / 333	None	ABC02318
MLOC_32800.1	283	2e-125	1 - 283	95	271 / 284	CUST_42067_PI390587928	ABC02318 ABC02324
MLOC_75734.1	258	2e-116	1 - 258	96	248 / 258	None	ABC02318 ABC02324 ABC14241
MLOC_6951.1	240	1e-107	1 - 240	96	231 / 240	None	ABC02318
AK355696	3670	3e-104	119 - 346	97	221 / 228	CUST_38222_PI390587928 CUST_33358_PI390587928	ABC02318 ABC13844 ABC17852 ABC33956 ABC41122 ABC44374 ABC44969
MLOC_50266.1	520	3e-104	153 - 380	97	221 / 228	None	ABC02318
MLOC_26867.1	278	3e-104	19 - 278	92	241 / 261	None	ABC02318
MLOC_69315.1	241	1e-103	1 - 232	96	223 / 232	None	ABC02318 ABC02324 ABC14241
MLOC_62250.1	280	1e-102	1 - 237	95	226 / 237	None	ABC02318
MLOC_8216.1	275	3e-99	2 - 229	96	218 / 228	None	ABC02318
MLOC_30499.1	270	1e-97	47 - 270	96	214 / 224	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_32169.1	392	2e-92	180 - 392	96	204 / 213	None	ABC02318
MLOC_48987.3	1992	2e-87	1784 - 1992	95	198 / 209	None	ABC02318 ABC08191
MLOC_1105.1	233	5e-87	35 - 233	96	191 / 199	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
AK360404	1606	1e-83	183 - 396	93	199 / 214	None	ABC02318 ABC09052
AK358231	1472	1e-83	181 - 394	93	199 / 214	None	ABC02318 ABC09052
MLOC_77942.1	266	4e-73	1 - 178	95	169 / 178	None	ABC02318
AK358068	1209	7e-71	1040 - 1200	97	156 / 161	None	ABC02318 ABC02324 ABC14241
MLOC_29096.1	338	4e-58	1 - 221	87	192 / 221	CUST_42067_PI390587928	ABC02318 ABC46988
MLOC_28077.1	138	4e-58	1 - 138	96	133 / 138	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
AK358182	994	2e-56	846 - 994	93	142 / 152	CUST_9543_PI390587928 CUST_14095_PI390587928 CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_57107.5	1284	2e-56	1048 - 1185	96	132 / 138	CUST_11125_PI390587928	ABC02318 ABC21260
MLOC_57107.2	1254	2e-56	1020 - 1157	96	132 / 138	None	ABC02318 ABC21260
MLOC_57107.1	1476	2e-56	1242 - 1379	96	132 / 138	CUST_11125_PI390587928	ABC02318 ABC21260
MLOC_57107.3	1809	2e-56	1575 - 1712	96	132 / 138	CUST_11125_PI390587928	ABC02318 ABC21260
MLOC_57107.4	1490	2e-56	1256 - 1393	96	132 / 138	CUST_11125_PI390587928	ABC02318 ABC21260
MLOC_28801.1	151	3e-55	4 - 151	93	138 / 148	None	ABC02318
MLOC_28076.1	672	3e-54	536 - 672	95	130 / 137	None	ABC02318
MLOC_28076.2	672	3e-54	536 - 672	95	130 / 137	None	ABC02318
AK370259	1278	4e-53	189 - 326	94	130 / 138	None	ABC02318 ABC21260
MLOC_32654.1	131	2e-52	1 - 128	96	123 / 128	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_1825.1	137	2e-52	10 - 137	96	123 / 128	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_30831.1	133	6e-52	1 - 133	95	126 / 133	None	ABC02318 ABC02324