- Probe CUST_42067_PI390587928
- Source Contig U35_44390
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_42067_PI390587928 | Hv_44K_v2 | CGAAGCCTTGAAGCCAATTGTGTGAAGCTCTATTTATCCAAGAATGCATATTATATATTG | 374 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.270 | 1.205 | 1.139 | 0.940 | 0.339 | 0.414 |
| Raw | 3829.957 | 5747.680 | 4772.887 | 6316.140 | 781.533 | 1036.880 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_29096.1 | 338 | 7e-23 | 70 - 129 | 98 | 59 / 60 | plus | ABC02318 ABC46988 |
| MLOC | MLOC_1105.1 | 233 | 7e-23 | 105 - 164 | 98 | 59 / 60 | minus | ABC02318 ABC02324 ABC14241 |
| MLOC | AK358182 | 994 | 3e-22 | 877 - 935 | 98 | 58 / 59 | plus | ABC02318 ABC02324 ABC14241 |
| MLOC | AK366204 | 2659 | 3e-22 | 2509 - 2567 | 98 | 58 / 59 | plus | ABC02318 ABC02324 ABC14241 |
| MLOC | MLOC_28077.1 | 138 | 3e-22 | 35 - 93 | 98 | 58 / 59 | plus | ABC02318 ABC02324 ABC14241 |
| MLOC | MLOC_32654.1 | 131 | 9e-22 | 1 - 58 | 98 | 57 / 58 | plus | ABC02318 ABC02324 ABC14241 |
| MLOC | MLOC_1825.1 | 137 | 9e-22 | 80 - 137 | 98 | 57 / 58 | minus | ABC02318 ABC02324 ABC14241 |
| MLOC | AK357043 | 2449 | 3e-21 | 2311 - 2370 | 97 | 58 / 60 | plus | ABC02318 ABC02324 ABC06221 ABC14241 ABC48970 |
| MLOC | MLOC_32800.1 | 283 | 3e-21 | 183 - 242 | 97 | 58 / 60 | plus | ABC02318 ABC02324 |
| MLOC | MLOC_30499.1 | 270 | 3e-21 | 117 - 176 | 97 | 58 / 60 | minus | ABC02318 ABC02324 ABC14241 |
| JLOC1 | JLOC1_19415.1 | 236 | 4e-23 | 70 - 129 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_31401.2 | 557 | 6e-21 | 457 - 515 | 97 | 57 / 59 | plus | |
| JLOC1 | JLOC1_31401.1 | 1474 | 6e-21 | 1374 - 1432 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC42057 | 509 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC46988 | 404 | 1e-23 | 120 - 179 | 98 | 59 / 60 | minus | ABC46988 |
| Harvest21 | ABC02323 | 921 | 1e-23 | 755 - 814 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC50116 | 613 | 6e-22 | 66 - 125 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_44390 | 509 | 3e-25 | 375 - 434 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48392 | 613 | 6e-22 | 66 - 125 | 97 | 58 / 60 | minus |
Contig Sequence (509 bp)
>U35_44390 509 Hv_44K_v2 CATTAGTCAAGTACAGCGACGCTGGTAGAGTTCCAGCGGCCACTACCGAGCCTCCTTCCC AATTAGGTCCGACAACCATGAGCCGTTGCGGACGTCAAGGTGATATCCAGCGGCGACGCT TGCCGGCACGGGCTCGCCACTTGTATCCACAAGCTCGCTGATGCCGTCTCCGTCACTCTC GGTCCCAAAGTGCTATTGATAGCTGAGAACATAAAGGTTTGATGCAGGGAGGAATGTTGT TATTCACCAAGACGATGTTCCTAAATTGACGCGAGTGACATTTGCCAATACAGAAGATGA TCAGACTGCTTCGTAGCTTGACGGTCGAAAAGAAGAACTCTGTTGAGGACCTTCAGGCCT AAAAAGTTGAAGTGCGAAGCCTTGAAGCCAATTGTGTGAAGCTCTATTTATCCAAGAATG CATATTATATATTGTAATAATAGGCATATCTGTTTTGTAACAGATTGGAAAAATTGTAAT ATACTACCTATGTGTTAATTTGATGGATT
Homology of Contig U35_44390 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |