barSeed - Barley Seed Development Database

Probe ABC02324

Source Contig ABC02324

barSeed

Links

Affymetrix Source Sequence (676 bp)

>ABC02324 676
GCACGAGGCTGGCGAGGTACGGGTAGGATGTGGTGGTGATTGGGAGCGGGCTCGGGGGAT
CGTTTCCGGCTTCCAGTCCAGAGGGCCCCAAGACAACCCGCTCACCCAGGTCCGTCACCC
TCCATTGGTTCGGTTCCTCTCCTGCAAACAACAACAGAGCAGACAACAGGGAGATTCTTT
CAGACAAATTAACTGTCCGAAGTCTGAAGAGAACTTATCAACAGAACAGGATTGCCAGTT
CTACATACAGAATTGCGATTCGTGATGGAACCGTCCGGTTCAGGAGCAGCAGAACCGGGC
GAGGACGGCCGCGACCAAGAACCGGCCCATGAGCGCTCCTACGCCCCCTCCAATGGAGCC
GGACCCGCGGTGGCGGAGACAAGGGAGGCGCCCAACTCGTCTGGACTGGAGTGCGTTCCT
CAGCGTTTCTTTGTTTCCTCTTGCGTAGTTCAACTCGCTGCTCGCGGGAGAGGCGATGCA
TAGGAAGGAACGGGACCTCCAGGCCTAAGAAAGTTGAAGTGCGAAGCCTTGAAGCCAATT
GTGTGAAGCAATACTTATCCAAGAATGCATATTATATATTGTAATAATAGACATATCTGC
TTTGTAATAGATTGGAAAGATTGTAATATACTACCTTTGTGTTAATTTGATGAATCTCAC
ATGTCCTTTCTGCTCT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_41203.1	960	2e-128	392 - 640	100	249 / 249	None	ABC02324
MLOC_47104.1	867	1e-106	326 - 575	95	237 / 250	None	ABC02324
MLOC_46267.1	1129	1e-101	267 - 516	94	234 / 250	None	ABC02324
MLOC_30499.1	270	3e-82	22 - 205	97	178 / 184	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_1105.1	233	3e-82	10 - 193	97	178 / 184	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
AK357043	2449	3e-73	2282 - 2449	96	162 / 168	CUST_42067_PI390587928	ABC02318 ABC02324 ABC06221 ABC14241 ABC48970
AK366204	2659	9e-73	2479 - 2659	94	173 / 184	CUST_42067_PI390587928 CUST_9543_PI390587928 CUST_14095_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_69315.1	241	1e-71	74 - 241	96	161 / 168	None	ABC02318 ABC02324 ABC14241
AK358068	1209	7e-69	1042 - 1204	96	156 / 163	None	ABC02318 ABC02324 ABC14241
MLOC_32044.1	306	3e-68	1 - 168	95	159 / 168	None	ABC02318 ABC02324 ABC14241
MLOC_46531.1	624	9e-68	464 - 624	96	154 / 161	None	ABC02324
AK359368	1072	1e-61	913 - 1071	94	149 / 159	CUST_5513_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_75734.1	258	2e-59	110 - 258	95	141 / 149	None	ABC02318 ABC02324 ABC14241
MLOC_30831.1	133	2e-59	1 - 125	100	125 / 125	None	ABC02318 ABC02324
AK358182	994	7e-59	847 - 985	96	134 / 139	CUST_14095_PI390587928 CUST_42067_PI390587928 CUST_9543_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_1825.1	137	1e-56	6 - 137	97	128 / 132	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_28077.1	138	4e-56	5 - 138	96	129 / 134	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241
MLOC_77548.3	1037	2e-55	834 - 1017	88	162 / 184	None	ABC02324 ABC18314
MLOC_77548.1	1141	2e-55	937 - 1120	88	162 / 184	None	ABC02324 ABC18314
MLOC_32800.1	283	3e-52	154 - 283	95	124 / 130	CUST_42067_PI390587928	ABC02318 ABC02324
MLOC_32654.1	131	1e-51	1 - 129	95	123 / 129	CUST_42067_PI390587928	ABC02318 ABC02324 ABC14241