- Probe CUST_14095_PI390587928
- Source Contig U35_50095
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14095_PI390587928 | Hv_44K_v2 | TTCATTTGTGATGTTGTGCACTGCAGTAGATAGGAATCCAGGGGAGAAGTGTAGGAACTG | 544 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.016 | 0.901 | 1.183 | 1.032 | 0.372 | 0.373 |
| Raw | 227.215 | 326.124 | 358.404 | 510.587 | 61.982 | 69.161 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358182 | 994 | 2e-24 | 608 - 667 | 100 | 60 / 60 | plus | ABC02318 ABC02324 ABC14241 |
| MLOC | AK366204 | 2659 | 2e-24 | 630 - 689 | 100 | 60 / 60 | plus | ABC02318 ABC02324 ABC14241 |
| MLOC | MLOC_57016.3 | 933 | 2e-24 | 801 - 860 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_57016.1 | 3440 | 2e-24 | 3243 - 3302 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_57016.2 | 2861 | 2e-24 | 2664 - 2723 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_33696.1 | 261 | 2e-24 | 188 - 247 | 100 | 60 / 60 | plus | ABC14241 |
| MLOC | MLOC_3199.1 | 213 | 2e-24 | 117 - 176 | 100 | 60 / 60 | plus | ABC14241 |
| MLOC | MLOC_2471.1 | 153 | 2e-24 | 62 - 121 | 100 | 60 / 60 | minus | ABC14241 |
| MLOC | MLOC_29787.1 | 325 | 7e-23 | 108 - 167 | 98 | 59 / 60 | plus | ABC14241 |
| MLOC | MLOC_48761.1 | 636 | 3e-21 | 293 - 352 | 97 | 58 / 60 | minus | ABC14241 |
| MLOC | MLOC_30244.1 | 252 | 3e-21 | 133 - 192 | 97 | 58 / 60 | plus | ABC14241 |
| JLOC1 | JLOC1_36908.1 | 2918 | 8e-25 | 2631 - 2690 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_1915.1 | 208 | 8e-25 | 115 - 174 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_20027.1 | 253 | 2e-21 | 133 - 192 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC52117 | 684 | 3e-25 | 545 - 604 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14241 | 967 | 3e-25 | 319 - 378 | 100 | 60 / 60 | plus | ABC14241 |
| Harvest35 | U35_50095 | 684 | 3e-25 | 545 - 604 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_21239 | 1209 | 3e-25 | 561 - 620 | 100 | 60 / 60 | plus |
Contig Sequence (684 bp)
>U35_50095 684 Hv_44K_v2 GTTGAGAGGGCTGATCTGGTGGCAGAAACGGCAGAGGTGATAGTGGTCGGGAGAATGGAC CCAGAGAAGCTCTGCTGCTTGCTGCATGAACTAACGCAGAAGCATGTGAAGATGGAAACC GAAAGAACCGTGACCGAAGGAGAAACTGCAGCTTCTTGGGAAACCAAGAACCGCGTTGGC CAGGCTACTTCCGGCTTGTTCGCTTCCGACACACCTATTACGCCGAGTGCGCCGCCAGTT CCCGAGGCATGGAGGAGCCAGACCGTGCCTTCCCAGAGATGCGCATACCGTTGGTCGCTA CCTTTGCCCGGCGCGCTAGGCGTGTGGGCTGCATCTGACATCGAGGGGACAATGGCGGTC TACGACCTCTGAAGGCTTATTCACCAACACAGCCAGCAGACGCTCCTGCACTCCGTCGTC ACCTTCGCTTTGCGCTAGCTGATTTTTTGTCGCATAAGCATTTTCTGCCAAGAGCTTTAA CTGACGTGTTCTTTGTTTCTATCCGTGGCTTAATGACACGGACATTCTCTCTTTTGCTTC GTTGTTCATTTGTGATGTTGTGCACTGCAGTAGATAGGAATCCAGGGGAGAAGTGTAGGA ACTGGGCATGGAATCCCAAGTCCTGTGGGCTGCCTGGAGTTAGTGGGCAGTCTTTGCTGC TGCTGCTCTGTTTTACTGCTGGGA
Homology of Contig U35_50095 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |