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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_11125_PI390587928Hv_44K_v2AAGAAAATGGGTGTACTGTGGTCGGGCTATAAGAAGACACTGGCATACCAACTAAGACTG693GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3961.4171.2460.8650.3960.415
Raw 118.743189.182144.486157.21625.64228.569



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_57107.512847e-23553 - 60910057 / 57minus ABC02318 ABC21260
MLOCMLOC_57107.114767e-23750 - 80610057 / 57minus ABC02318 ABC21260
MLOCMLOC_57107.318097e-23750 - 80610057 / 57minus ABC02318 ABC21260
MLOCMLOC_57107.414907e-23750 - 80610057 / 57minus ABC02318 ABC21260
JLOC1JLOC1_36964.314524e-23667 - 72310057 / 57plus
JLOC1JLOC1_36964.214604e-23675 - 73110057 / 57plus
Harvest21ABC205017743e-25694 - 75310060 / 60plus
Harvest35U35_94467753e-25694 - 75310060 / 60plus



Contig Sequence (775 bp)

>U35_9446 775 Hv_44K_v2
CGTCTTAGGGGGGCCTGGGAGTGGGAAAGGAACGCAAAGATAGTACGGATCGCTTCGGAT
TTTGGATTTTCTCATGTGAGTGCTGGTGACCTTCTGCGGAATGAAATATCTTCTGGCACC
GATCAAGGGGAGTGGATCCTAGAGATAATAAGAGAAGGGAGGATTGTTCCATCAGAGATA
ACTGTTGAACTGGTCAGAAAAGCAATTGAATCAAGCACTGCTAAAAGAGTTCTTATTGAT
GGTTTCCCAAGGTGCGAGGAAAACAGAATTGCCTTTGAAAAAATAGTAAGTTCTCTGTTT
GGCTTGCATTACTGGTCCAGAACTTTCTATTAATTGAAGTGGTATGTGATTAGATGGATA
AGTCCATGATGTTCATCAGTTTCTGTTCAATTTTTGGTAAGGCTAATAACAGGTGAATCT
TGAAGTTTTGTAGCGCTCTTGGCTGTAACCATTTGTGTATACACTTGTCTTTACTTTTTT
TTTTACGTCAATATGCTGGCCCAAAACTGCCAGTGTACAGTATGCAATCAGCAGTTTCTT
ATGCATGTATTTTTTCAGTAGCAAATCAGTAACTATGTCCTGCTTTAGAGTGATGCACTT
TTAGGTTTTATGCAGTAGTCCACAGTTAATGTTTGCCCCCACTATGGTGGATGTATGGTT
GCATGTCAACAACTACCACAAGCATTTATATCAAAGAAAATGGGTGTACTGTGGTCGGGC
TATAAGAAGACACTGGCATACCAACTAAGACTGGAACTGAACCAGACCTTGTGCT



Homology of Contig U35_9446 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None