barSeed - Barley Seed Development Database

Probe ABC01983

Source Contig ABC01983

barSeed

Links

Affymetrix Source Sequence (635 bp)

>ABC01983 635
CCAGAACAACCTCCACCTCTACCGGTTCCGCAACAACATGCCGCTCAGCACCGCCGCCGC
CGCCAACTTCACCCGTGGCGAGCTCGCCACCGCCCTCCGCAAGGCTGGAACGTGGGAGGA
AAAGAACCTCAATTCATGGGCTAATGTATCTGATAGAGAACAACGATTTCATGGTGATCG
GAATAATCAGTCCACCTGCTGTGGGCAAGTCAACCATCATGAATGAGCTTTATGGATACG
ACGGAAGCTGGCCTGCATGGCCAAGGAGTACTTCAAGTTTCTGAACAAGTACCTGGCCAC
GTTCGATGGATCGACTGATGAGGCCGACGGAATCGGTGCTGCAAAGGAGGAAGCCGTTGC
AGCAATCATTGATTTTGTCAAGTCAGCTGATCTCTATCAGGTGTCCAGCTTGCAGAAACT
ACAAGGTTTTTGCACAAGTGAAGTACAAAGCTATGAAGCGTATCAACAAAGAGTAACATA
TCTATTGTAATAGTAGGCAGTAGTAGGTATATCTAGGTTGTGGTGTAGTGTAAAGATTGT
AATAGACAAATTTAATGTTGGTTTGGACGAATTTCATTTGCCTCCTATCCTGTTTGAAAT
ATTGATTATGAATGTGATTTGAATACCTATGAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_9023.1	293	1e-75	32 - 218	94	176 / 187	CUST_7276_PI390587928	ABC01983 ABC10695 ABC21919 ABC22344 ABC45186
AK371193	5337	1e-71	5157 - 5336	94	169 / 180	CUST_20427_PI390587928 CUST_7276_PI390587928 CUST_29085_PI390587928 CUST_39794_PI390587928	ABC01983 ABC10695 ABC16473 ABC21919 ABC22344 ABC45186
AK376213	767	5e-65	585 - 767	91	168 / 184	CUST_201_PI390587928	ABC01983 ABC10695 ABC12724 ABC22344 ABC45186
AK367337	1893	9e-63	1715 - 1893	91	164 / 180	CUST_201_PI390587928	ABC01983 ABC08690 ABC10695 ABC12724 ABC21919 ABC22344 ABC45186
AK251874.1	1714	3e-57	1570 - 1714	94	137 / 145	CUST_16307_PI390587928 CUST_5437_PI390587928 CUST_7276_PI390587928	ABC01983 ABC10695 ABC22344
AK364632	1676	1e-56	683 - 839	92	145 / 157	CUST_26506_PI390587928 CUST_26508_PI390587928	ABC01983 ABC04827 ABC04828
MLOC_5776.1	1772	1e-56	765 - 921	92	145 / 157	CUST_26508_PI390587928 CUST_26506_PI390587928	ABC01983 ABC04827 ABC04828
MLOC_5776.2	1619	1e-56	758 - 914	92	145 / 157	CUST_26506_PI390587928	ABC01983 ABC04827 ABC04828
MLOC_5776.3	1755	1e-56	731 - 887	92	145 / 157	CUST_26508_PI390587928 CUST_26506_PI390587928	ABC01983 ABC04827 ABC04828
AK368446	3379	2e-54	3234 - 3379	93	136 / 146	CUST_24533_PI390587928 CUST_20427_PI390587928	ABC01983 ABC10695 ABC10696 ABC14205 ABC21919 ABC22344 ABC45186