barSeed - Barley Seed Development Database

Probe CUST_5437_PI390587928

Source Contig U35_29085

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5437_PI390587928	Hv_44K_v2	ATATAGTGTTTGTTCGAGTTCTATCTCAGTAATTTGCTGCTGCGTGCAGTCCTGTAGATG	298	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.345	0.964	1.026	0.872	0.266	0.269
Raw	52.002	61.081	55.054	80.286	7.527	8.435

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251874.1	1714	2e-24	990 - 1049	100	60 / 60	plus	ABC01983 ABC10695 ABC22344
Harvest21	ABC28257	563	3e-25	299 - 358	100	60 / 60	plus
Harvest35	U35_29085	563	3e-25	299 - 358	100	60 / 60	plus

Contig Sequence (563 bp)

>U35_29085 563 Hv_44K_v2
GGGTTCCATGANCACAGNNTGGCAGAAAAATAGAGCTAAATGGCTAAACAGAGTGCCTGT
TTCAACCAAAATTTACAATCAACGGTAATTAATACAGGATGCTAAATAGTACCAACCATT
GGATATGCGTGTCAGGCTTGTGCGCCATTAGATAACTGAACTTGTCCCTCGCTTGTTTGG
TGCCGATAGATGTATGTGTGAAAACTTTTCCTCCTTCTAGCACCTGAAATAGGACTAGAT
ATCACTTTGTGAACATATTTTGTGGTGGATTTTATGCTTGCTTGCCTCTAGTTTGGAAAT
ATAGTGTTTGTTCGAGTTCTATCTCAGTAATTTGCTGCTGCGTGCAGTCCTGTAGATGCA
TCACTTGTTGTTTCTAGATGTAAAGATGACAGAGGGTTTCTTTGGAGGATTGGATCTGCA
GAGGATGTTCAAGAGCTTCCTGGACATAACGATACTGTCAGCACTATGGCTTTCAGTTCA
GATGGGAAATTAGTGGCTTGTGGAAGTATGGATGGACAGATAAATGTATGGAATACAGCT
ACACGAACACTTCAGGGAACCCT

Homology of Contig U35_29085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None