- Probe CUST_26506_PI390587928
- Source Contig U35_16005
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26506_PI390587928 | Hv_44K_v2 | TCTTCAGCCTGTACAACCTGCTGGCGAGCCCCTCCGGCAAGGCCTTTGTCTACAGGAAGG | 501 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.852 | 0.912 | 1.932 | 1.970 | 0.898 | 0.704 |
| Raw | 122.639 | 183.603 | 381.141 | 600.123 | 100.511 | 84.587 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364632 | 1676 | 2e-24 | 473 - 532 | 100 | 60 / 60 | plus | ABC01983 ABC04827 ABC04828 |
| MLOC | MLOC_5776.1 | 1772 | 2e-24 | 555 - 614 | 100 | 60 / 60 | plus | ABC01983 ABC04827 ABC04828 |
| MLOC | MLOC_5776.2 | 1619 | 2e-24 | 548 - 607 | 100 | 60 / 60 | plus | ABC01983 ABC04827 ABC04828 |
| MLOC | MLOC_5776.3 | 1755 | 2e-24 | 521 - 580 | 100 | 60 / 60 | plus | ABC01983 ABC04827 ABC04828 |
| JLOC1 | JLOC1_3737.1 | 1810 | 8e-25 | 586 - 645 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04828 | 1631 | 3e-25 | 480 - 539 | 100 | 60 / 60 | plus | ABC04828 |
| Harvest35 | U35_16005 | 688 | 3e-25 | 502 - 561 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16004 | 1620 | 3e-25 | 470 - 529 | 100 | 60 / 60 | plus |
Contig Sequence (688 bp)
>U35_16005 688 Hv_44K_v2 GTTAAGCAGACGCGGCCGCATTGGGCTTTAGGGTTTCCTCTCTCTCTGTCGCCTCCCAAT CCCCATCCCCTCCATCTCCCTCTCCCACTCCGGCGGCGGCGTAGCAGCGGAGAGAAGGAG TCCGTCCGGCCATGGCGACGATCGTGAACACGACGGAGGAGGAGCCGATGCTGGCGGTGG TGCGCTCCATCGCGCAGCAGACCTGGGCCGACGCCGGCCCCGAGGTCGCCGACCCGGAGG TGGCCCGCCTCTGCGCCGAGGCGCAGCAGCACGTCCTCGCCGGCCGCTGGCTCGACATGG CCGCCCTCATGCTCGCCTCCGCCGATCTCCTCCTCCTCTCCCCCCGCGTCCCCGACAAAG AGCTCGAGTGCATCCTCACCGTCATCTGCAACCTCGTCACCAAGGCCGGATCCGAGGACG AGTCGCTGGAGATCGCCAGGCTCATCTGCGCCAAGCTCACCCACCAGCCCGCCGACAAGA CCACGCTGCGCATCAAAGTCCTCTTCAGCCTGTACAACCTGCTGGCGAGCCCCTCCGGCA AGGCCTTTGTCTACAGGAAGGCGCTCGAGCTCGCCGCAGCCGGGAAGGCCGCCGACTGCG TCGTCCCCACCTTCAAGAACATCGACGCCTTCGTCGCCTACTGGGGCATCGGCAAGCCGG AGCAGAGGGACCTGTTCCTCGCCGTCTC
Homology of Contig U35_16005 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g01290.1 | 417 | 6e-74 | protein|proteasome subunit, putative, expressed |
| Brachypodium v1_2 | Bradi5g02340.2 | 399 | 1e-77 | |
| Arabidopsis v10 | None |