barSeed - Barley Seed Development Database

Probe CUST_16307_PI390587928

Source Contig U35_41904

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16307_PI390587928	Hv_44K_v2	AAATCGCCTATGCTGCTATCTACCTCTAAAATTTAGTCTCCGAGAATTTTTTCTTCTTAC	529	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.445	1.249	1.107	0.920	0.331	0.361
Raw	137.257	179.892	143.547	181.678	24.393	28.011

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251874.1	1714	3e-22	598 - 656	98	59 / 60	plus	ABC01983 ABC10695 ABC22344
Harvest21	ABC37196	589	3e-25	530 - 589	100	60 / 60	plus
Harvest35	U35_41904	589	3e-25	530 - 589	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_41904 589 Hv_44K_v2
CCGATACAGTCCTGCCTCCTCCCCATCTCCGACGGTGTCGCCCAGGCCAAGGGTCCCAAC
ACCACCGCCGCCCCACCTGGTGCACTGCTGGCCGCCGCTCCCTGAACCTGAGGAGCTACA
CGCCCTCCCGTCGGTGGTGTCGATGCCGGCTCCTTCCACCGCGTCGCCACCCTCGCTGGG
GGTCGCTCGACGAGGACGCCCAGAAACCCTAGACGGATCGTCCCTCGCCTGCTTCCTTCC
CCGACGCGACAGGCGAATCCAAGTTGAGTTCCGCCGGATCCGCCCTGCCTTCCCCGCTCG
CTTCCTCGCCCTCCCCGCCTCCAAGGTGACCCGGCCCCTGGACAGGGTTACAGGGATCCG
GGTTTCATCCACACCACGTTCCTCAAGGACCTGTGGCCAAACAGATAGTATTCATATCAG
ATTGGGCACGAGCTACAAAGCGGGACGATGGCGTGGGGCAAGGCCGCCACCTTCCGTGTG
TCCCCCTACCAGGGCCAGGCCTCGCTGCAGCGCGTCGTCATCTTCGAAGAAATCGCCTAT
GCTGCTATCTACCTCTAAAATTTAGTCTCCGAGAATTTTTTCTTCTTAC

Homology of Contig U35_41904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None