barSeed - Barley Seed Development Database

Probe ABC00331

Source Contig ABC00331

barSeed

Links

Affymetrix Source Sequence (624 bp)

>ABC00331 624
CAGGTCATCCCAACAGCCAGGAGGGTCATTTACGCTTCTCAGCTCACTGCTAAGCCAAGG
CTGCTGGAGCCTGTGTACCTGGTTGAGATCCAGGCCCCCGAGAATGCACTTGGTGGTATC
TATGGTGTTTTGAATCAGAAGAGAGGGCATGTGTTTGAGGAGATGCAGAGGCCTGGTACC
CCGCTGTACAACATCAAGGCTTACCTCCCGGTCATCGAGTCCTTCGGGTTCTCAAGTACC
CTCAGGGCAGCTACATCTGGCCAGGCTTTCCCCCAGTGTGTGTTTGACCACTGGGACATC
ATGTCTTCTGATCCTCTGGAGGCCGGCTCCCAGTCTGCCACCCTTGTCACGGAGATCCGC
AAGCGCAAGGGTCTCAAGGAACAGATGACTCCTCTATCTGATTTCGAGGACAAGCTCTAA
ACTTTTGATTCTGTTACATGGTCTAGTTTGCTTATGCTGCTAAGAGAGCTGCGCTATTTT
CTGTCATTTGAGCCTGTCGCTGTATTGCTATTGCAATGTCCTATCTGTCGTGGTACCGGC
ACTTTGTTTTGATGTCTCTTGATGTTAAAACTTAGATCATATATCTGTTATACCCTGGTA
GTTTTTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK361008	1917	0.0	1309 - 1917	97	592 / 609	CUST_7288_PI390587928 CUST_26547_PI390587928 CUST_2906_PI390587928 CUST_9719_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC_20444.1	1330	0.0	695 - 1303	97	592 / 609	CUST_7288_PI390587928 CUST_26547_PI390587928 CUST_9719_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
AK250137.1	2948	0.0	2257 - 2861	97	588 / 605	CUST_7288_PI390587928 CUST_23704_PI390587928 CUST_26547_PI390587928 CUST_2906_PI390587928 CUST_9719_PI390587928 CUST_9726_PI390587928 CUST_26564_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC_64334.1	2298	0.0	1523 - 2127	97	588 / 605	CUST_7288_PI390587928 CUST_26547_PI390587928 CUST_9719_PI390587928 CUST_26564_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC_45952.1	1218	1e-165	309 - 744	91	396 / 436	CUST_13357_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
AK356124	2429	3e-162	1927 - 2362	90	394 / 436	CUST_2906_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.3	3683	1e-161	1234 - 1659	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_2918_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.8	2391	1e-161	117 - 542	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.4	3241	1e-161	792 - 1217	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.1	3612	1e-161	1063 - 1488	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.2	3954	1e-161	1405 - 1830	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_2918_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.5	2457	1e-161	8 - 433	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.6	2927	1e-161	478 - 903	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_2918_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.7	2629	1e-161	107 - 532	91	388 / 427	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_20444.3	371	2e-144	1 - 306	97	297 / 306	None	ABC00297 ABC00331 ABC00685 ABC00827 ABC00901 ABC36959
MLOC_20444.2	352	1e-130	1 - 284	96	274 / 284	None	ABC00297 ABC00331 ABC00685 ABC00827 ABC00901
MLOC_15661.2	2786	3e-122	337 - 763	85	365 / 428	CUST_7649_PI390587928 CUST_9742_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_15661.3	2968	3e-122	155 - 581	85	365 / 428	CUST_7649_PI390587928 CUST_9742_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_15661.1	2483	1e-56	36 - 212	89	158 / 177	CUST_9742_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003