barSeed - Barley Seed Development Database

Probe ABC00575

Source Contig ABC00575

barSeed

Links

Affymetrix Source Sequence (454 bp)

>ABC00575 454
CAGGGGACACGGAGAACTTCATTGCCCTGATTGGGCAGGCATCAACTTCCTTCTCGTTTG
TCAGGGTTGCATTCTTCGTGATGAACTGATCCAAACCAACCAAAGCAACAGTGTTACCAC
AGGGAACATCCTCAACAGACCAGAGTTGGTGGGGAAATCGGTGGAGGAGGCCAAGAAGGT
GATTCTGCAGGACAAGCCAGAGGCGCAAATCATAGTTCTGCCGGTGGGGACAATTGTGAC
CATGGAATATCGGATCGACCGCGTCCGCCTCTTTGTCGATAAACTCGACAACATTGCCCA
GGTCCCCAGGGTCGGCTAGCAAGCTTGAGAGCTAGCCTGCTGCTGGCGTGTATGTATTGC
AGCTTCACCATCTCTTCTTGGCTATAGCAAGATTGAGATTTATAAATCATATACAATAAG
AGTTGCTGCGGAAAACCAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_45238.1	357	5e-84	189 - 357	100	169 / 169	None	ABC00223 ABC00575 ABC00819
MLOC_360.3	3683	6e-68	2310 - 2449	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_2918_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.8	2391	6e-68	1018 - 1157	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.4	3241	6e-68	1868 - 2007	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.9	1673	6e-68	200 - 339	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00413 ABC00575 ABC00626 ABC00685 ABC00901 ABC01003
MLOC_360.1	3612	6e-68	2139 - 2278	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.2	3954	6e-68	2481 - 2620	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_2918_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.5	2457	6e-68	1084 - 1223	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.6	2927	6e-68	1554 - 1693	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_2918_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOC_360.7	2629	6e-68	1183 - 1322	100	140 / 140	CUST_23704_PI390587928 CUST_2906_PI390587928 CUST_9726_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
AK250137.1	2948	3e-61	1464 - 1603	97	136 / 140	CUST_7288_PI390587928 CUST_23704_PI390587928 CUST_26547_PI390587928 CUST_2906_PI390587928 CUST_9719_PI390587928 CUST_9726_PI390587928 CUST_26564_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
AK356124	2429	1e-60	1138 - 1276	97	135 / 139	CUST_2906_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003
AK361008	1917	1e-59	519 - 658	96	135 / 140	CUST_7288_PI390587928 CUST_26547_PI390587928 CUST_2906_PI390587928 CUST_9719_PI390587928	ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOC_29799.1	863	1e-59	440 - 579	96	135 / 140	CUST_2906_PI390587928	ABC00413 ABC00536 ABC00575 ABC00685 ABC00901 ABC01003