- Probe CUST_23704_PI390587928
- Source Contig U35_28977
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23704_PI390587928 | Hv_44K_v2 | ACTTTGCTAAGATGTATGCCTCCAAGTTTGGAGTTGATGAGGTGAAGATGATGGAGAGGC | 610 | GeneList: brown4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.585 | 1.159 | 1.616 | 1.038 | 0.822 | 0.760 |
| Raw | 563.515 | 546.295 | 782.813 | 703.782 | 217.264 | 222.861 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_360.3 | 3683 | 2e-24 | 3042 - 3101 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | MLOC_360.8 | 2391 | 2e-24 | 1750 - 1809 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | MLOC_360.4 | 3241 | 2e-24 | 2600 - 2659 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | MLOC_360.9 | 1673 | 2e-24 | 932 - 991 | 100 | 60 / 60 | minus | ABC00413 ABC00575 ABC00626 ABC00685 ABC00901 ABC01003 |
| MLOC | MLOC_360.1 | 3612 | 2e-24 | 2871 - 2930 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | MLOC_360.2 | 3954 | 2e-24 | 3213 - 3272 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | MLOC_360.5 | 2457 | 2e-24 | 1816 - 1875 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | MLOC_360.6 | 2927 | 2e-24 | 2286 - 2345 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | MLOC_360.7 | 2629 | 2e-24 | 1915 - 1974 | 100 | 60 / 60 | minus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 |
| MLOC | AK250137.1 | 2948 | 3e-21 | 812 - 871 | 97 | 58 / 60 | plus | ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959 |
| MLOC | MLOC_42305.1 | 1079 | 3e-21 | 365 - 424 | 97 | 58 / 60 | plus | ABC00413 ABC00685 ABC00901 ABC01003 |
| MLOC | MLOC_35745.1 | 203 | 3e-21 | 95 - 154 | 97 | 58 / 60 | minus | ABC00413 ABC00685 ABC00901 |
| JLOC1 | JLOC1_229.2 | 3541 | 8e-25 | 649 - 708 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_229.1 | 3199 | 8e-25 | 649 - 708 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_27423.1 | 1079 | 2e-21 | 365 - 424 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_23026.1 | 203 | 2e-21 | 95 - 154 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC28116 | 673 | 3e-25 | 611 - 670 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00413 | 2889 | 1e-23 | 803 - 862 | 98 | 59 / 60 | plus | ABC00413 |
| Harvest21 | ABC00901 | 2854 | 6e-22 | 785 - 844 | 97 | 58 / 60 | plus | ABC00901 |
| Harvest21 | ABC00896 | 1776 | 6e-22 | 794 - 853 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_28977 | 673 | 3e-25 | 611 - 670 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_483 | 2975 | 3e-25 | 835 - 894 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_373 | 2860 | 6e-22 | 785 - 844 | 97 | 58 / 60 | plus |
Contig Sequence (673 bp)
>U35_28977 673 Hv_44K_v2 GCCCATCTCAGCAAAAAAGAAGCTAGCACANGCTCCACACACACCATGGCAGCCATGGCC ACCACCGCCTCCAGCCTCCTCAAGAGCTCCTTCTCCGGCGTCCGCCTCCCGGCGGCGGCC CGCACCCCGTCCTGCGTTGCCACCCCGCGCGCCGGCGCCATCTGCAACTCAATCTCATCC TCCACTCCTGAATCACTTGAGATGTACAAGGGTGACAGGGATGGGGATGAATACCTGATC AACCTTATTGATTCACCTGGCCACGTTGACTTTTCTTCGGAAGTCACAGCTGCTCTTCGT ATCACTGATGGTGCCTTGGTTGTTGTTGACTGTATTGAGGGTGTCTGTGTGCAGACCGAA ACTGTGCTGCGCCAAGCTCTTGGTGAGAGGATTAGGCCTGTTCTTACTGTGAACAAGATG GACAGATGCTTTCTCGAGCTTCAGTTTGAAGGTGAGGAAGCATACCAGACTTTCTCCCGT GTCATTGAAAATGCCAATGTCATCATGGCAACATATGAAGATGTGCTCCTTGGTGATGTC CAAGTGTACCCAGAGAAGGGGACTGTTGCATTCTCTGCTGGTTTGCATGGGTGGGCTTTC ACCCTTACAAACTTTGCTAAGATGTATGCCTCCAAGTTTGGAGTTGATGAGGTGAAGATG ATGGAGAGGCTGT
Homology of Contig U35_28977 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g02820.3 | 652 | 6e-99 | protein|elongation factor, putative, expressed |
| Brachypodium v1_2 | Bradi3g44480.1 | 844 | 9e-100 | |
| Arabidopsis v10 | AT1G56070.1 | 843 | 5e-95 | | Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843 |