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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9726_PI390587928Hv_44K_v2GTGGGCTTTTACCCTTACAAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTTGATGA775GeneList: skyblue3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4711.1181.6481.1890.9050.745
Raw 499.456503.850766.865788.613229.001210.917



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK250137.129487e-23792 - 8519859 / 60plus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003 ABC36959
MLOCMLOC_42305.110797e-23345 - 4049859 / 60plus ABC00413 ABC00685 ABC00901 ABC01003
MLOCMLOC_35745.12033e-21115 - 1749758 / 60minus ABC00413 ABC00685 ABC00901
MLOCMLOC_360.336833e-213062 - 31219758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOCMLOC_360.823913e-211770 - 18299758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOCMLOC_360.432413e-212620 - 26799758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOCMLOC_360.916733e-21952 - 10119758 / 60minus ABC00413 ABC00575 ABC00626 ABC00685 ABC00901 ABC01003
MLOCMLOC_360.136123e-212891 - 29509758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOCMLOC_360.239543e-213233 - 32929758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOCMLOC_360.524573e-211836 - 18959758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOCMLOC_360.629273e-212306 - 23659758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
MLOCMLOC_360.726293e-211935 - 19949758 / 60minus ABC00297 ABC00331 ABC00413 ABC00536 ABC00575 ABC00626 ABC00685 ABC00827 ABC00901 ABC01003
JLOC1JLOC1_27423.110794e-23345 - 4049859 / 60plus
JLOC1JLOC1_23026.12032e-21115 - 1749758 / 60minus
JLOC1JLOC1_229.235412e-21629 - 6889758 / 60plus
JLOC1JLOC1_229.131992e-21629 - 6889758 / 60plus
Harvest21ABC281166736e-22591 - 6509758 / 60plus
Harvest21ABC0090128546e-22765 - 8249758 / 60plusABC00901
Harvest21ABC0089617766e-22774 - 8339758 / 60plus
Harvest35U35_3708383e-25776 - 83510060 / 60plus
Harvest35U35_289776736e-22591 - 6509758 / 60plus
Harvest35U35_48329756e-22815 - 8749758 / 60plus
Harvest35U35_37328606e-22765 - 8249758 / 60plus



Contig Sequence (838 bp)

>U35_370 838 Hv_44K_v2
GTCCCCTAAACCCGAAGCCCTCTTCTCCGCCGCCGCTTCCTCATCTCATCCTCCCCGGAT
CGGGACGCGGAACGCGAAGCCCCAAGGAACTTAAATTCTCGGTGTGATATTCAAAGGCAG
TCACGATGGTGAAGTTTACTGCAGAGGAGCTCCGTGGAATTATGGACAAAAAGAACAATA
TCCGTAACATGTCTGTTATTGCTCATGTCGACCATGGCAAGTCTACGCTTACGGATTCCC
TTGTGGCAGCTGCTGGGATTATTGCCCAGGAAGTAGCTGGTGATGTTCGCATGACTGATA
CGCGTGCAGACGAGGCAGAACGTGGTATTACAATCAAATCCACAGGCATCTCTCTTTTCT
ATCAGATGACTCCTGAATCACTCGAGATGTACAAGGGCGACAGGGATGGTGATGAGTACC
TGATCAACCTTATCGATTCACCTGGCCACGTTGACTTCTCTTCGGAAGTCACAGCTGCTC
TTCGTATCACTGATGGTGCTTTGGTGGTTGTTGACTGTATTGAGGGTGTGTGTGTGCAGA
CTGAAACTGTGCTGCGCCAAGCTCTTGGTGAGAGGATTCGGCCTGTCCTCACCGTGAACA
AGATGGACAGATGCTTCCTTGAGCTTCAAGTGGAAGGTGAGGAAGCATATCAGACTTTCT
CCCGTGTCATTGAAAATGCCAATGTCATCATGGCAACATATGAAGATGTGCTCCTTGGTG
ATGTCCAAGTGTACCCAGAGAAGGGGACTGTTGCATTCTCTGCTGGTCTGCATGGGTGGG
CTTTTACCCTTACAAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTTGATGAGGC



Homology of Contig U35_370 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g02820.36525e-152protein|elongation factor, putative, expressed
Brachypodium v1_2Bradi3g44480.18447e-153
Arabidopsis v10AT1G56070.18432e-145| Symbols: LOS1 | Ribosomal protein S5/Elongation factor G/III/V family protein | chr1:20968245-20971077 REVERSE LENGTH=843