barSeed - Barley Seed Development Database

Probe CUST_7649_PI390587928

Source Contig U35_209

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7649_PI390587928	Hv_44K_v2	GGGTTGTCATGTACTGAGCCTATTTCGGTGTCTTATCAGATTTAACAAATAATTTACCTT	1098	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.816	2.644	1.211	0.613	0.254	0.232
Raw	2016.430	1699.059	687.752	551.686	82.215	80.231

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15661.2	2786	2e-24	186 - 245	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
MLOC	MLOC_15661.3	2968	2e-24	4 - 63	100	60 / 60	minus	ABC00297 ABC00331 ABC00413 ABC00536 ABC00685 ABC00827 ABC00901 ABC01003
JLOC1	JLOC1_10749.1	2890	8e-25	2788 - 2847	100	60 / 60	plus
Harvest21	ABC00536	1175	3e-25	1099 - 1158	100	60 / 60	plus	ABC00536
Harvest35	U35_209	1175	3e-25	1099 - 1158	100	60 / 60	plus

Contig Sequence (1175 bp)

>U35_209 1175 Hv_44K_v2
GGCGAAGTCTGATCCTATGGTTCTCTGTTCCATGGAAGAGTCTGGCGAGCATATCATTGC
TGGAGCTGGAGAGCTGCACCTTGAAATTTGCTTGAAGGATCTGCAGGAGGATTTCATGGG
TGGTGCTGAGATTATTGTTTCCCCTCCTGTTGTCTCTTTCCGCGAGACCGTTCTTGAGAA
GTCCTGCCGTACCGTGATGAGCAAGTCCCCGAACAAGCATAACCGTCTCTACATGGAGGC
TCGCCCCATGGAGGAAGGACTGGCTGAGGCCATTGACGATGGTCGCATCGGCCCACGTGA
TGATCCCAAGGTGCGCTCCAAGGTCCTGTCCGAGGAGTTTGGCTGGGACAAGGATCTCGC
CAAGAAGATTTGGTGTTTCGGACCCGAAACCACTGGGCCGAATATGGTTGTTGATATGTG
CAAGGGAGTGCAGTATCTGAACGAAATCAAGGACTCCGTTGTGGCCGGCTTCCAGTGGGC
GTCGAAAGAAGGGGCATTGGCAGAAGAAAACATGCGTGGCATTTGCTTTGAGGTCTGTGA
CGTCGTCCTCCACACAGATGCTATTCACAGGGGTGGCGGTCAGGTCATCCCGACGGCTAG
AAGGGTCATTTATGCTTCTCAGCTCACGGCTAAGCCAAGGTTACTCGAGCCTGTATACCT
AGTGGAGATCCAGGCACCTGAGAATGCACTTGGTGGCATCTATGGCGTTCTCAACCAGAA
GAGAGGGCATGTGTTTGAGGAGATGCAGAGGCCTGGTACCCCACTTTACAACATCAAGGC
TTACCTACCTGTTATCGAGTCCTTTGGTTTCTCCAGCACACTTCGGGCTGCGACGTCTGG
CCAGGCCTTCCCGCAGTGTGTGTTTGATCACTGGGACATGATGTCTGCTGATCCTTTGGA
GGCAGGATCACAGGCGGCGCAGCTGGTCTTGGATATCCGCAAGAGGAAGGGGTTGAAAGA
ACAGATGACCCCTCTCTCCGAATTCGAGGACAAGCTCTAAGCTTTTGCTCCCATGTGATC
TATGATCTCGCCCAGTTTTTGATCTATACTTGGTCTGTTGTCAGGAGATTAGTACTCTTT
TTCGTATTCCAGTTCCTTGGGTTGTCATGTACTGAGCCTATTTCGGTGTCTTATCAGATT
TAACAAATAATTTACCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g32030.1	844	protein\|elongation factor, putative, expressed
Brachypodium v1_2	Bradi2g45070.1	844
Arabidopsis v10	AT1G56070.1	843	\| Symbols: LOS1 \| Ribosomal protein S5/Elongation factor G/III/V family protein \| chr1:20968245-20971077 REVERSE LENGTH=843