- Gene HORVU3Hr1G110470
- Gene IDHORVU3Hr1G110470
- Location chr3H: 681727647 - 681732762
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u25435 | 25.5 | - | - | 5116 | -14975 | Containing |
Transcripts from Gene HORVU3Hr1G110470
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU3Hr1G110470.1 | 1747 | gene=HORVU3Hr1G110470 CDS=3-896 |
| HORVU3Hr1G110470.2 | 1665 | gene=HORVU3Hr1G110470 CDS=3-1211 |
| HORVU3Hr1G110470.3 | 1665 | gene=HORVU3Hr1G110470 CDS=3-1211 |
| HORVU3Hr1G110470.4 | 1791 | gene=HORVU3Hr1G110470 CDS=2-1417 |
| HORVU3Hr1G110470.5 | 1558 | gene=HORVU3Hr1G110470 CDS=2-1141 |
| HORVU3Hr1G110470.6 | 1559 | gene=HORVU3Hr1G110470 CDS=2-1024 |
| HORVU3Hr1G110470.7 | 1785 | gene=HORVU3Hr1G110470 CDS=1-1425 |
| HORVU3Hr1G110470.8 | 1693 | gene=HORVU3Hr1G110470 CDS=3-1349 |
| HORVU3Hr1G110470.9 | 1656 | gene=HORVU3Hr1G110470 CDS=1-1248 |
| HORVU3Hr1G110470.10 | 1784 | gene=HORVU3Hr1G110470 CDS=1-1632 |
| HORVU3Hr1G110470.11 | 1686 | gene=HORVU3Hr1G110470 CDS=1-909 |
| HORVU3Hr1G110470.12 | 1600 | gene=HORVU3Hr1G110470 CDS=422-1132 |
| HORVU3Hr1G110470.13 | 1604 | gene=HORVU3Hr1G110470 CDS=1-1254 |
| HORVU3Hr1G110470.14 | 1615 | gene=HORVU3Hr1G110470 CDS=1-1242 |
| HORVU3Hr1G110470.15 | 1617 | gene=HORVU3Hr1G110470 CDS=1-1320 |
| HORVU3Hr1G110470.16 | 1641 | gene=HORVU3Hr1G110470 CDS=467-1354 |
| HORVU3Hr1G110470.17 | 1272 | gene=HORVU3Hr1G110470 CDS=1-1272 |
| HORVU3Hr1G110470.18 | 1261 | gene=HORVU3Hr1G110470 CDS=1-1260 |
| HORVU3Hr1G110470.19 | 1276 | gene=HORVU3Hr1G110470 CDS=1-1275 |
| HORVU3Hr1G110470.20 | 644 | gene=HORVU3Hr1G110470 CDS=78-644 |
Exon Structure of HORVU3Hr1G110470
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g72890.1 | +2 | 1e-50 | 181 | 99/118 (84%) | protein|transposon protein, putative, CACTA, En/Spm sub-class, expressed |
| TAIR PP10 | AT1G16610 @ ARAPORT AT1G16610.1 @ TAIR |
+2 | 1e-39 | 149 | 82/118 (69%) | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | chr1:5675925-5678686 REVERSE LENGTH=414 |
| BRACH PP3 | Bradi2g61380.4.p | +2 | 9e-52 | 184 | 105/119 (88%) | pacid=32777636 transcript=Bradi2g61380.4 locus=Bradi2g61380 ID=Bradi2g61380.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons