Transcript Data
Barley RTD
Links



Exon Structure of HORVU3Hr1G110470.20

ChromosomeExonStartStopDirection
chr3H1681729385681729304-
chr3H2681729697681729472-
chr3H3681730030681729865-
chr3H4681730185681730105-
chr3H5681730359681730271-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g72890.2 +3 4e-37 135 78/95 (82%) protein|transposon protein, putative, CACTA, En/Spm sub-class, expressed
TAIR PP10None-----
BRACH PP3 Bradi2g61380.4.p +3 4e-38 137 83/96 (86%) pacid=32777636 transcript=Bradi2g61380.4 locus=Bradi2g61380 ID=Bradi2g61380.4.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (644 bp)

>HORVU3Hr1G110470.20 644 150831_barley_pseudomolecules
AAAACACATTAGTATAATGAGCTAACCGTCCTTAATTTGCAGGAAGTTATGGCGAAGTGG
TGAATGTGGAGCTATCAATGGACAAATTTGTTAATCTCCCTCGTGGGTATGGATACATCG
AGTTCAAGAAGAGGACTGATGCTGAGAAGGCTCTTCTTTACATGGATGGTGGGCAAATTG
ATGGAAATGTTGTCAAGCTGAAGTTCACACTGCCACCACGCCAAAAGGCTTCTTCACCTT
TAAAGCCACCTCCTCCTCCCCCCAGAAGAGATGCTCCTCAGAATGATAAAGTTGCTATTG
GTGCTGAAAAGGATGCGCAGCAGCGCCCTGGGGGATCAGCATCTCCACGAAAGAAGCCAC
CTTCTCCTCCGCGAAAGAGGTCTCCTCCAAATAGAAGGGCTGAGTCACCCCGGCGTCCAC
CCAATCCATCTCCAAGGCGTCGTGCTGATTCTCCTATTCGTCGTCGACCAGATCTTTCCC
CTGTTAGGCGTGGTGACAGAAGACCAGGATCTCCAATTAGAAGACGTTCCCCTTCACCTA
GAAGGCATAGGTCACCAATGCGGAGGGGTCGTGGCAGCTTATCACCTCGCAGACGCTCCC
CGGGGCCTCCTAGGCGCTCACCTGGGCCTCCCAGACGGCGGTAA