Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
HORVU3Hr1G11048071.0--14269-5822Containing
HORVU3Hr1G1104901.3--271-19820Containing
HORVU3Hr1G11047025.5--5116-14975Containing




Transcripts from Gene BART1_0-u25435

TranscriptLength(bp)Description
BART1_0-u25435.00151805180 bp MSTRG.25435.1 MSTRG.25435
BART1_0-u25435.00226242624 bp MSTRG.25435.2 MSTRG.25435
BART1_0-u25435.00322212221 bp MSTRG.25435.3 MSTRG.25435
BART1_0-u25435.00461866186 bp MSTRG.25435.4 MSTRG.25435
BART1_0-u25435.00551025102 bp MSTRG.25435.5 MSTRG.25435
BART1_0-u25435.00618431843 bp MSTRG.25435.6 MSTRG.25435
BART1_0-u25435.00718701870 bp MSTRG.25435.7 MSTRG.25435
BART1_0-u25435.00818021802 bp MSTRG.25435.8 MSTRG.25435
BART1_0-u25435.00919821982 bp MSTRG.25435.9 MSTRG.25435
BART1_0-u25435.01016981698 bp MSTRG.25435.10 MSTRG.25435
BART1_0-u25435.01119391939 bp MSTRG.25435.11 MSTRG.25435
BART1_0-u25435.01213661366 bp MSTRG.25435.12 MSTRG.25435
BART1_0-u25435.01312931293 bp MSTRG.25435.13 MSTRG.25435
BART1_0-u25435.01419551955 bp MSTRG.25435.14 MSTRG.25435
BART1_0-u25435.01516561656 bp MSTRG.25435.15 MSTRG.25435
BART1_0-u25435.01616931693 bp MSTRG.25435.16 MSTRG.25435
BART1_0-u25435.017680680 bp MSTRG.25435.17 MSTRG.25435
BART1_0-u25435.01819871987 bp MSTRG.25435.18 MSTRG.25435
BART1_0-u25435.01912301230 bp MSTRG.25435.19 MSTRG.25435
BART1_0-u25435.02016701670 bp MSTRG.25435.20 MSTRG.25435
BART1_0-u25435.02117451745 bp MSTRG.25435.21 MSTRG.25435
BART1_0-u25435.02217581758 bp MSTRG.25435.22 MSTRG.25435
BART1_0-u25435.02330353035 bp MSTRG.25435.23 MSTRG.25435
BART1_0-u25435.02428022802 bp MSTRG.25435.24 MSTRG.25435
BART1_0-u25435.02524862486 bp MSTRG.25435.25 MSTRG.25435
BART1_0-u25435.02621812181 bp MSTRG.25435.26 MSTRG.25435
BART1_0-u25435.02724322432 bp MSTRG.25435.27 MSTRG.25435
BART1_0-u25435.02822932293 bp MSTRG.25435.28 MSTRG.25435
BART1_0-u25435.02929422942 bp MSTRG.25435.29 MSTRG.25435
BART1_0-u25435.03013931393 bp MSTRG.25435.30 MSTRG.25435



Exon Structure of BART1_0-u25435


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os01g72880.1 +3 0.0 642 323/373 (87%) protein|DNA mismatch repair protein Mlh1, putative, expressed
TAIR PP10 AT4G09140 @ ARAPORT
AT4G09140.1 @ TAIR
+3 2e-166 528 260/343 (76%) Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737
BRACH PP3 Bradi2g61370.2.p +3 0.0 677 342/373 (92%) pacid=32771965 transcript=Bradi2g61370.2 locus=Bradi2g61370 ID=Bradi2g61370.2.v3.1 annot-version=v3.1




GO Annotation

Generated by PANNZER

GO IDGO terms
GO:0016887ATPase activity
GO:0016788hydrolase activity, acting on ester bonds
GO:0061574ASAP complex
GO:1902494catalytic complex
GO:0010182sugar mediated signaling pathway
GO:0044454nuclear chromosome part
GO:0009555pollen development
GO:0048316seed development
GO:0005730nucleolus
GO:0006468protein phosphorylation
GO:0000377RNA splicing, via transesterification reactions with bulged adenosine as nucleophile
GO:0005654nucleoplasm
GO:0000398mRNA splicing, via spliceosome
GO:0000794condensed nuclear chromosome
GO:0005524ATP binding
GO:0003723RNA binding
GO:0045892negative regulation of transcription, DNA-templated
GO:0000381regulation of alternative mRNA splicing, via spliceosome
GO:0032300mismatch repair complex
GO:0030983mismatched DNA binding
GO:0008270zinc ion binding
GO:0005681spliceosomal complex
GO:0004672protein kinase activity
GO:0006397mRNA processing
GO:0006298mismatch repair
GO:0003682chromatin binding
GO:0000786nucleosome
GO:0008658penicillin binding
GO:0000785chromatin
GO:0009845seed germination
GO:0006334nucleosome assembly
GO:0006312mitotic recombination
GO:0005515protein binding
GO:0007219Notch signaling pathway
GO:0005737cytoplasm
GO:0016021integral component of membrane



Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons