- Gene BART1_0-u25435
- Gene IDBART1_0-u25435
- Location chr3H: 681727258 - 681747348
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
---|---|---|---|---|---|---|
HORVU3Hr1G110480 | 71.0 | - | - | 14269 | -5822 | Containing |
HORVU3Hr1G110490 | 1.3 | - | - | 271 | -19820 | Containing |
HORVU3Hr1G110470 | 25.5 | - | - | 5116 | -14975 | Containing |
Transcripts from Gene BART1_0-u25435
Transcript | Length(bp) | Description |
---|---|---|
BART1_0-u25435.001 | 5180 | 5180 bp MSTRG.25435.1 MSTRG.25435 |
BART1_0-u25435.002 | 2624 | 2624 bp MSTRG.25435.2 MSTRG.25435 |
BART1_0-u25435.003 | 2221 | 2221 bp MSTRG.25435.3 MSTRG.25435 |
BART1_0-u25435.004 | 6186 | 6186 bp MSTRG.25435.4 MSTRG.25435 |
BART1_0-u25435.005 | 5102 | 5102 bp MSTRG.25435.5 MSTRG.25435 |
BART1_0-u25435.006 | 1843 | 1843 bp MSTRG.25435.6 MSTRG.25435 |
BART1_0-u25435.007 | 1870 | 1870 bp MSTRG.25435.7 MSTRG.25435 |
BART1_0-u25435.008 | 1802 | 1802 bp MSTRG.25435.8 MSTRG.25435 |
BART1_0-u25435.009 | 1982 | 1982 bp MSTRG.25435.9 MSTRG.25435 |
BART1_0-u25435.010 | 1698 | 1698 bp MSTRG.25435.10 MSTRG.25435 |
BART1_0-u25435.011 | 1939 | 1939 bp MSTRG.25435.11 MSTRG.25435 |
BART1_0-u25435.012 | 1366 | 1366 bp MSTRG.25435.12 MSTRG.25435 |
BART1_0-u25435.013 | 1293 | 1293 bp MSTRG.25435.13 MSTRG.25435 |
BART1_0-u25435.014 | 1955 | 1955 bp MSTRG.25435.14 MSTRG.25435 |
BART1_0-u25435.015 | 1656 | 1656 bp MSTRG.25435.15 MSTRG.25435 |
BART1_0-u25435.016 | 1693 | 1693 bp MSTRG.25435.16 MSTRG.25435 |
BART1_0-u25435.017 | 680 | 680 bp MSTRG.25435.17 MSTRG.25435 |
BART1_0-u25435.018 | 1987 | 1987 bp MSTRG.25435.18 MSTRG.25435 |
BART1_0-u25435.019 | 1230 | 1230 bp MSTRG.25435.19 MSTRG.25435 |
BART1_0-u25435.020 | 1670 | 1670 bp MSTRG.25435.20 MSTRG.25435 |
BART1_0-u25435.021 | 1745 | 1745 bp MSTRG.25435.21 MSTRG.25435 |
BART1_0-u25435.022 | 1758 | 1758 bp MSTRG.25435.22 MSTRG.25435 |
BART1_0-u25435.023 | 3035 | 3035 bp MSTRG.25435.23 MSTRG.25435 |
BART1_0-u25435.024 | 2802 | 2802 bp MSTRG.25435.24 MSTRG.25435 |
BART1_0-u25435.025 | 2486 | 2486 bp MSTRG.25435.25 MSTRG.25435 |
BART1_0-u25435.026 | 2181 | 2181 bp MSTRG.25435.26 MSTRG.25435 |
BART1_0-u25435.027 | 2432 | 2432 bp MSTRG.25435.27 MSTRG.25435 |
BART1_0-u25435.028 | 2293 | 2293 bp MSTRG.25435.28 MSTRG.25435 |
BART1_0-u25435.029 | 2942 | 2942 bp MSTRG.25435.29 MSTRG.25435 |
BART1_0-u25435.030 | 1393 | 1393 bp MSTRG.25435.30 MSTRG.25435 |
Exon Structure of BART1_0-u25435
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os01g72880.1 | +3 | 0.0 | 642 | 323/373 (87%) | protein|DNA mismatch repair protein Mlh1, putative, expressed |
TAIR PP10 | AT4G09140 @ ARAPORT AT4G09140.1 @ TAIR |
+3 | 2e-166 | 528 | 260/343 (76%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737 |
BRACH PP3 | Bradi2g61370.2.p | +3 | 0.0 | 677 | 342/373 (92%) | pacid=32771965 transcript=Bradi2g61370.2 locus=Bradi2g61370 ID=Bradi2g61370.2.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZERGO ID | GO terms |
---|---|
GO:0016887 | ATPase activity |
GO:0016788 | hydrolase activity, acting on ester bonds |
GO:0061574 | ASAP complex |
GO:1902494 | catalytic complex |
GO:0010182 | sugar mediated signaling pathway |
GO:0044454 | nuclear chromosome part |
GO:0009555 | pollen development |
GO:0048316 | seed development |
GO:0005730 | nucleolus |
GO:0006468 | protein phosphorylation |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile |
GO:0005654 | nucleoplasm |
GO:0000398 | mRNA splicing, via spliceosome |
GO:0000794 | condensed nuclear chromosome |
GO:0005524 | ATP binding |
GO:0003723 | RNA binding |
GO:0045892 | negative regulation of transcription, DNA-templated |
GO:0000381 | regulation of alternative mRNA splicing, via spliceosome |
GO:0032300 | mismatch repair complex |
GO:0030983 | mismatched DNA binding |
GO:0008270 | zinc ion binding |
GO:0005681 | spliceosomal complex |
GO:0004672 | protein kinase activity |
GO:0006397 | mRNA processing |
GO:0006298 | mismatch repair |
GO:0003682 | chromatin binding |
GO:0000786 | nucleosome |
GO:0008658 | penicillin binding |
GO:0000785 | chromatin |
GO:0009845 | seed germination |
GO:0006334 | nucleosome assembly |
GO:0006312 | mitotic recombination |
GO:0005515 | protein binding |
GO:0007219 | Notch signaling pathway |
GO:0005737 | cytoplasm |
GO:0016021 | integral component of membrane |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons