- Transcript HORVU3Hr1G110470.6
- Transcript IDHORVU3Hr1G110470.6
- Gene IDHORVU3Hr1G110470
Barley RTD
Exon Structure of HORVU3Hr1G110470.6
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 681728097 | 681727654 | - |
| chr3H | 2 | 681728628 | 681728591 | - |
| chr3H | 3 | 681728832 | 681728758 | - |
| chr3H | 4 | 681729054 | 681728926 | - |
| chr3H | 5 | 681729385 | 681729308 | - |
| chr3H | 6 | 681729697 | 681729472 | - |
| chr3H | 7 | 681730030 | 681729865 | - |
| chr3H | 8 | 681730185 | 681730105 | - |
| chr3H | 9 | 681730317 | 681730271 | - |
| chr3H | 10 | 681730783 | 681730695 | - |
| chr3H | 11 | 681731206 | 681731096 | - |
| chr3H | 12 | 681732469 | 681732395 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os01g72890.2 | +2 | 8e-52 | 183 | 99/118 (84%) | protein|transposon protein, putative, CACTA, En/Spm sub-class, expressed |
| TAIR PP10 | AT1G16610 @ ARAPORT AT1G16610.1 @ TAIR |
+2 | 1e-40 | 151 | 82/118 (69%) | Symbols: SR45, RNPS1 | arginine/serine-rich 45 | chr1:5675925-5678686 REVERSE LENGTH=414 |
| BRACH PP3 | Bradi2g61380.4.p | +2 | 9e-53 | 185 | 105/119 (88%) | pacid=32777636 transcript=Bradi2g61380.4 locus=Bradi2g61380 ID=Bradi2g61380.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1559 bp)
>HORVU3Hr1G110470.6 1559 150831_barley_pseudomolecules CTCCCGCTCCCTCTCCTCCTCCTCGTCCTCGCCCGCCCGCACCCGGGGCCGCTCCCCTCC CGCCGCCAAGCGCAGTTCACCTGGAGCAAAGAAAGGGCGATCACCTTCACCCCCTCTCAA AAAAGGGTCACCATCAAGGAAAGGCCGCTCAGCATCTCCCCCACCGAAGAAAGCTTCACC TCCTAGGAAAGCATCTCCCCCTCCTCAGTCGGTTGTTCTACACGTTGATCATCTATCCAG AAATGTGAATGAGGCTCATTTGAAGGAGATATTTGGAAGTTATGGCGAAGTGGTGAATGT GGAGCTATCAATGGACAAATTTGTTAATCTCCCTCGTGGGTATGGATACATCGAGTTCAA GAAGAGGACTGATGCTGAGAAGGCTCTTCTTTACATGGATGGTGGGCAAATTGATGGAAA TGTTGTCAAGCTGAAGTTCACACTGCCACCACGCCAAAAGGCTTCTTCACCTTTAAAGCC ACCTCCTCCTCCCCCCAGAAGAGATGCTCCTCAGAATGATAAAGTTGCTATTGGTGCTGA AAAGGATGCGCAGCAGCGCCCTGGGGGATCAGCATCTCCACGAAAGAAGCCACCTTCTCC TCCGCGAAAGAGGTCTCCTCCAAATAGAAGGGCTGAGTCACCCCGGCGTCCACCCAATCC ATCTCCAAGGCGTCGTGCTGATTCTCCTATTCGTCGTCGACCAGATCTTTCCCCTGTTAG GCGTGGTGACAGAAGACCAGGATCTCCAATTAGAAGACGTTCCCCTTCACCTAGAAGGCA TAGGTCACCAATGCGGAGGGGTCGTGGCAGCTTATCACCTCGCAGACGCTCCCCGGGGCC TCCTAGGCGCTCACCTGGGCCTCCCAGACGGCGGTCACCACCACCAAGGAGATTGAGGAG TCCTCCAAGAAGGCCACCACCACCACCTCCCCGTCGTCACAGTCGCTCCCCTCCTCCTCG CCGCCCTCTTCACTCCCGCTCTAGATCGATTTCTCCTCGCAGAGGGGGCGAGGACCACCA TTGAGGCGTGGAAGGTCGGATTCATCATATTCTGCATCACCCAGTCCTCCAAGAAAGGGA CCAAGAAGGGTGTCAAGGAGCCGCAGCCCTAGAAGGCCTCCCAGAGGAAGGAGCGGATCT AGCGACAGCGGGAGCAGCAGCTCTTCCCCAACCCCAAGGCGCAGGTAGAAAGAAAGAAAC TCGTAACGTGTGTTGTTCCTGGCAGGTAAAAAAACTTTCTCTTCTCTCTCGACTGTCACC ATGGATTGCGTCTGCATGCATGTATCTTGCTGTGAGCTCAAGTCAAGAGGCGATCGATGT GAGGGGCGGGACGATGCGATGAGGTGCTCGGCATGCCTCCCTGGCATTTGTACTCACAAG ACAGACTGTATGATGACGACTTGTGTTGATGATTTGCCTGTACTGGAACTATTTTTTTAT AATTCTGCGGTTGTTTGTCAACTACAAATCTGGCTAGTATTATTATCCTGTTGCCACTCT TGAGAATTAATGAGTTGTTTACTAGTTGATTGATGGATTGGCTCGTGGAGTTGATTTTT