Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G070780	91.0	-	-	4267	-421	Containing

Transcripts from Gene BART1_0-u53381

Transcript	Length(bp)	Description
BART1_0-u53381.001	3275	3275 bp MSTRG.53381.1 MSTRG.53381
BART1_0-u53381.002	3272	3272 bp MSTRG.53381.2 MSTRG.53381
BART1_0-u53381.003	3091	3091 bp MSTRG.53381.3 MSTRG.53381
BART1_0-u53381.004	3034	3034 bp MSTRG.53381.4 MSTRG.53381
BART1_0-u53381.005	2907	2907 bp MSTRG.53381.5 MSTRG.53381

Exon Structure of BART1_0-u53381

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g06140.1	+2	0.0	745	447/744 (60%)	protein|no apical meristem protein, putative, expressed
TAIR PP10	AT1G33060 @ ARAPORT AT1G33060.1 @ TAIR	+2	8e-66	235	117/215 (54%)	Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=648
BRACH PP3	Bradi3g16480.1.p	+2	0.0	830	494/809 (61%)	pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0005634	nucleus
GO:0003677	DNA binding
GO:0016021	integral component of membrane
GO:0006355	regulation of transcription, DNA-templated
GO:0016787	hydrolase activity

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons