Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u53381.005

ChromosomeExonStartStopDirection
chr7H1385320479385319938-
chr7H2385321739385320596-
chr7H3385322058385321816-
chr7H4385322493385322164-
chr7H5385323086385322800-
chr7H6385324011385323651-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB6.3497613.843115.8706
morexETI9.446212.488716.2565
morexLEA15.217912.932114.3093
morexEPI10.748421.830715.596
morexROO11.507616.73247.16859
morexROO223.81822.371426.5234
morexNOD27.4138.3518322.9041
morexRAC28.557432.483530.1811
morexINF140.241929.786532.1375
morexINF240.679931.663735.9326
morexCAR538.988532.275436.6392
morexCAR1515.231212.72911.2407
morexLEM31.50432.849525.6764
morexLOD79.563460.984563.6135
morexPAL26.023122.717918.9311
morexSEN15.560112.182311.0422



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g06140.1 +1 0.0 702 401/642 (62%) protein|no apical meristem protein, putative, expressed
TAIR PP10 AT1G33060 @ ARAPORT
AT1G33060.2 @ TAIR		 +1 3e-66 235 117/215 (54%) Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=652
BRACH PP3 Bradi3g16480.1.p +1 0.0 753 412/585 (70%) pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2907 bp)

>BART1_0-u53381.005 2907 150831_barley_pseudomolecules
GGCACTCGCTTTCTTCTCCCACACGTCTCCTCCCCGCGTCCTCCCCCTAAAAATCCCCAA
ATCCGACCAAACCCTAGGCAAAATCCACTCCCCTCCGCTTCCTTCGCTGCTAAGTATATC
CCCTGGGCTCCGAATCTCCTACCGGGTTGGGTCTTGTAGTCGTTGGATGAGAGCTTGGGA
CAGTGGAGGAGGATGACGGTGATGGAGCTCAAGGCGCTACCGCTCGGTTTCCGGTTCCAC
CCCACCGACGAGGAGCTCGTCAGGCACTACCTCAAGGGGAAGATCACGGGGCAGATCAAG
AACGAGGTCGAGGTGATCCCGGAGATCGACGTCTGCAAGTGCGAGCCGTGGGACCTCCCA
GATAAAGCTTTGATCCGCTCGGAGGATCCAGAGTGGTTCTTCTTTGCACCCAAGGACCGC
AAATATCCCAATGGAAGCAGGTCAAACAGGGCGACGGAGGCCGGGTACTGGAAGGCTACC
GGGAAGGACAGGGTCATCAAGTCCAAGGGCGAGAAGAAAAAGCAGCATATGATTGGCATG
AAGAAGACCCTTGTGTTCCACCGAGGACGTGCTCCAAAAGGGGAGCGCACTGGTTGGATT
ATGCACGAGTACCGCACCACCGAGCCAGAGTTTGAGTCTGGCGAGCAGGGTGGCTATGTT
CTGTACCGCCTATTTCAAAAGCAAGTGGAGAAAACTGAGCGCTCCATTCCGGAGGAAATG
GATAGAAGTGGCTACTCTCCCACTCCATCTCGTTCTACTCCTGACAATATGGAAGCAAAC
GAGGAAGCTATCACACTCATAAATAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCCA
ATTGAGTTGCCATGTACAATTGAAACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGAC
CGAAATGGCAATCCCGGGACAGATGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGGT
GTCGATGAAAGTCCCAAGCAGGCCGATCTGTCAGTTGGCTCTCTGGCTCACCTAATTGAT
TCACAGACGAAAAATCTCGGTTCTCATGAGTTTGCCACCGTTTCTGCCCCCATGTTACCG
GATGACCATTTGGACAATCTTCTACTTCATTTAACTCATAATTCGGTGGAAGATTTCTTG
AATGAAACAATTGCTGATCCAGACGAGCTTTCGTCAACTGCATGTAAAGTTCAGTACGAT
TCAGACAATGGGATTATGCAGGCTCAGGGTGATTTGCTATATGATGATCCAAACTGGTTT
GGTAATTTTCTGTCAGATGACACAAATCCACAACCAAGTGGATTATATGAGAATGCACCA
TTGCTTCCTTATGGCACTAATCCTGATGTACTTTCCATGGACTCCGGCGACGAGTCCTTG
CAAGATTTGTTCAATAGCATGGACGATTCAAGTTGGCAGAATGATGTATGGAGCAACGGA
TTTGGATTTAATCCCATGCATCAGCAGTTACAGTCTACTGTGCATCCGAACTATATATTT
TCTCAACAGGGCATTGCACGCAGGAGGCTTCGGCTACTAGATTCATTGTCTGATGTCAAT
GTTGAGAGTAGAGAGAGCATGACCAGAGATGAACATGAAGATGAAGAATCAGATATTGTA
ACTTCGAAATATAGGAGTGAATCTGTTGAATCATCTGCAGATGTAGATGAGTCTGAGTCA
ACCGGGGTTACTATTATGAGCCGGCGCCGTGCTCTAACTAAAAGTGTGCCTTCCGACCGC
GATGATGCTGAATCAACGGGGATTACTATTATGGGCCGGCGCTCTGCTCCAAGTTCAAAT
GCGCCTTCCGATGAAGCTGATGCTGAGGCAACAGGGATTAATATTGTGAGCCGACGCACT
GCTCCAAGTTCAAGCACAGATAACTCATTTACCACCGAACAGGGGACTGCAGTGCGAAGG
TTGCGGCTACAATCGAACCTTGACGCAGGATCATGTTCCAGTGTTGATGGTTTGTCAAGT
TGCATTATAGAACATGGAAGTGAAAACGAAGGGCTGGAAGCTGAGGTGAGGGCTTCTTAC
GCTTGAACTAATTTTTCAACTGAACTTTTGTGGTAAAAGATAAATATTGGAGGTCCTACG
GTTAGTTTCATTGTAGAATGCGTGGAAGTTGTCTTTGTTTATGACCTGTTCCTGGGCCCT
CTTTATTCGGCCTGTCAATGAATTCCTGCATGACAATGATGCCTGGCAATGATCTAAAGT
TTGTAATCTATGTCGTTGAAGTAATACTATAATGTTTTGGTATTTGCCTTCCAGATTGAC
GAGCATGTGGATACAAACTTCCTTGATGATGTTGGTTTTGCTGGCAACAGTCATGCTGAT
GAGCATATGTACATGCCTGATCATGCTAATTCTCTTACGAGGCTGCGGAAGACAGCAGAG
AAAAGCGACAAGGAGAACAAGCAGGAGTGTGGTCCCCAGTCACATGTGAGAGCACCAAGG
AAGAGGGGAGGCTTCGCAGCACGCATGATCTTGCCAGTTCTGTCGGTGGCTCTTCTCGTT
CTTGTTAGCGTTGGGGTCTACGGATGGGCATAATAGCTCTCTTAAAATGGGATTTAATGT
GTCACATTTTCCCCACATCGGCTGTGAGCATTGTACATACTGTGTCTTACTGCCCGCGTT
TAGACGGTTGTAAGACAGAGAAGTGTTTGTTCCCCTTTCGGCGGGGAAGTGTAAGTGAGG
TAGCAAATGAGAAGCGGGATGAAGCAAGGAGCAAGTGTTGCTGTAGATGCCTGTGACTTG
GTACATGCTAGTTTTCGTTTTTCTGTCACCGCAGGTGTTGGCAACCAGGTTGTAGTCATC
CATTATGCGTGTTGTTGTGATGTTGTAAGGTCTGAACCTAATTAGATCTGTTGCAGATCC
TTTTTCCCATTTTGTGGAACTTTGCAG



Protein Sequence (617 aa)

>BART1_0-u53381.005 617 150831_barley_pseudomolecules
MTVMELKALPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPDKAL
IRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSKGEKKKQHMIGMKKTL
VFHRGRAPKGERTGWIMHEYRTTEPEFESGEQGGYVLYRLFQKQVEKTERSIPEEMDRSG
YSPTPSRSTPDNMEANEEAITLINKESPESGLHGCPIELPCTIETLGAPVTRWLADRNGN
PGTDEANDVGMPFHRGVDESPKQADLSVGSLAHLIDSQTKNLGSHEFATVSAPMLPDDHL
DNLLLHLTHNSVEDFLNETIADPDELSSTACKVQYDSDNGIMQAQGDLLYDDPNWFGNFL
SDDTNPQPSGLYENAPLLPYGTNPDVLSMDSGDESLQDLFNSMDDSSWQNDVWSNGFGFN
PMHQQLQSTVHPNYIFSQQGIARRRLRLLDSLSDVNVESRESMTRDEHEDEESDIVTSKY
RSESVESSADVDESESTGVTIMSRRRALTKSVPSDRDDAESTGITIMGRRSAPSSNAPSD
EADAEATGINIVSRRTAPSSSTDNSFTTEQGTAVRRLRLQSNLDAGSCSSVDGLSSCIIE
HGSENEGLEAEVRASYA