Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u53381	91.0	-	-	4267	-421	Containing

Transcripts from Gene HORVU7Hr1G070780

Transcript	Length(bp)	Description
HORVU7Hr1G070780.1	2844	gene=HORVU7Hr1G070780 CDS=239-1351
HORVU7Hr1G070780.2	2847	gene=HORVU7Hr1G070780 CDS=239-1354
HORVU7Hr1G070780.3	2957	gene=HORVU7Hr1G070780 CDS=209-2062
HORVU7Hr1G070780.4	2734	gene=HORVU7Hr1G070780 CDS=235-2073
HORVU7Hr1G070780.5	2819	gene=HORVU7Hr1G070780 CDS=322-2436
HORVU7Hr1G070780.6	2816	gene=HORVU7Hr1G070780 CDS=322-2433
HORVU7Hr1G070780.7	2706	gene=HORVU7Hr1G070780 CDS=211-2220
HORVU7Hr1G070780.8	3039	gene=HORVU7Hr1G070780 CDS=221-1333
HORVU7Hr1G070780.9	2763	gene=HORVU7Hr1G070780 CDS=272-2284
HORVU7Hr1G070780.10	2380	gene=HORVU7Hr1G070780 CDS=1-849

Exon Structure of HORVU7Hr1G070780

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os08g06140.2	+2	0.0	501	253/350 (72%)	protein|no apical meristem protein, putative, expressed
TAIR PP10	AT1G33060 @ ARAPORT AT1G33060.1 @ TAIR	+2	3e-66	235	117/215 (54%)	Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=648
BRACH PP3	Bradi3g16480.1.p	+2	0.0	545	274/354 (77%)	pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons