- Transcript BART1_0-u53381.002
- Transcript IDBART1_0-u53381.002
- Gene IDBART1_0-u53381
Barley RTD
Exon Structure of BART1_0-u53381.002
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 385320482 | 385319661 | - |
| chr7H | 2 | 385320686 | 385320596 | - |
| chr7H | 3 | 385321739 | 385320936 | - |
| chr7H | 4 | 385322055 | 385321816 | - |
| chr7H | 5 | 385322493 | 385322164 | - |
| chr7H | 6 | 385323086 | 385322800 | - |
| chr7H | 7 | 385324348 | 385323651 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.000000000657384 | 0.000322361 | 0.000000277335 |
| morex | ETI | 3.54486 | 0.0000000320181 | 0.00241623 |
| morex | LEA | 0.0000000188099 | 0.0000000733036 | 0 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0 | 0.00000030247 | 0.00000000588858 |
| morex | ROO2 | 0.00000000252566 | 0.000000523319 | 0.00000390352 |
| morex | NOD | 0 | 0.000000503597 | 0 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 0.00188159 | 0.0000237492 | 0.000000177164 |
| morex | INF2 | 4.87551 | 1.54477 | 0.135025 |
| morex | CAR5 | 6.67282 | 3.76835 | 0.00532411 |
| morex | CAR15 | 1.62709 | 1.66763 | 1.42508 |
| morex | LEM | 0.000000000470568 | 0 | 0.000000000338842 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0.00000127049 | 0.00949753 | 0 |
| morex | SEN | 0 | 0.0000000114991 | 0.0319907 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g06140.3 | +2 | 0.0 | 743 | 445/741 (60%) | protein|no apical meristem protein, putative, expressed |
| TAIR PP10 | AT1G33060 @ ARAPORT AT1G33060.1 @ TAIR |
+2 | 7e-66 | 235 | 117/215 (54%) | Symbols: ANAC014, NAC014 | NAC 014 | chr1:11975518-11978493 REVERSE LENGTH=648 |
| BRACH PP3 | Bradi3g16480.1.p | +2 | 0.0 | 831 | 494/808 (61%) | pacid=32813441 transcript=Bradi3g16480.1 locus=Bradi3g16480 ID=Bradi3g16480.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3272 bp)
>BART1_0-u53381.002 3272 150831_barley_pseudomolecules CGGGGAGGGGGTTATTAAATATAAACGAAACATTTTTTTTATAACTTAAAAACGTACAAC GGGTTGAATATTGGAAAAGCGAGGGTGTTTTTGCAAAAAAGCCAGGCTTTATTATCAGGG GAGATATATATATAGATAGCTTTGTACGTGTTTTTTTGGGGCTTTGCTTTGCGGTTGCCA TCGCTTTCTCTTTGCTTTAATTTCGAGGATCACTCGACAGTGGGCGGCGTGGTCCGGCGG CAGTGGCCGAACCGTAATACGATGGTCATCAACAGGGTAAACTCGGACGAGGGGGTATAT ACAGAGCAAATTCCGGACACGGTAAAGGAAGTCACGCGGCACTCGCTTTCTTCTCCCACA CGTCTCCTCCCCGCGTCCTCCCCCTAAAAATCCCCAAATCCGACCAAACCCTAGGCAAAA TCCACTCCCCTCCGCTTCCTTCGCTGCTAAGTATATCCCCTGGGCTCCGAATCTCCTACC GGGTTGGGTCTTGTAGTCGTTGGATGAGAGCTTGGGACAGTGGAGGAGGATGACGGTGAT GGAGCTCAAGGCGCTACCGCTCGGTTTCCGGTTCCACCCCACCGACGAGGAGCTCGTCAG GCACTACCTCAAGGGGAAGATCACGGGGCAGATCAAGAACGAGGTCGAGGTGATCCCGGA GATCGACGTCTGCAAGTGCGAGCCGTGGGACCTCCCAGATAAAGCTTTGATCCGCTCGGA GGATCCAGAGTGGTTCTTCTTTGCACCCAAGGACCGCAAATATCCCAATGGAAGCAGGTC AAACAGGGCGACGGAGGCCGGGTACTGGAAGGCTACCGGGAAGGACAGGGTCATCAAGTC CAAGGGCGAGAAGAAAAAGCAGCATATGATTGGCATGAAGAAGACCCTTGTGTTCCACCG AGGACGTGCTCCAAAAGGGGAGCGCACTGGTTGGATTATGCACGAGTACCGCACCACCGA GCCAGAGTTTGAGTCTGGCGAGCAGGGTGGCTATGTTCTGTACCGCCTATTTCAAAAGCA AGTGGAGAAAACTGAGCGCTCCATTCCGGAGGAAATGGATAGAAGTGGCTACTCTCCCAC TCCATCTCGTTCTACTCCTGACAATATGGAAGCAAACGAGGAAGCTATCACACTCATAAA TAAGGAATCTCCTGAATCTGGTCTGCATGGATGTCCAATTGAGTTGCCATGTACAATTGA AACTCTGGGCGCCCCGGTTACAAGGTGGCTTGCAGACCGAAATGGCAATCCCGGGACAGA TGAAGCAAACGATGTAGGCATGCCTTTTCATCGTGGTGTCGATGAAAGTCCCAAGGCCGA TCTGTCAGTTGGCTCTCTGGCTCACCTAATTGATTCACAGACGAAAAATCTCGGTTCTCA TGAGTTTGCCACCGTTTCTGCCCCCATGTTACCGGATGACCATTTGGACAATCTTCTACT TCATTTAACTCATAATTCGGTGGAAGATTTCTTGAATGAAACAATTGCTGATCCAGACGA GCTTTCGTCAACTGCATGTAAAGTTCAGTACGATTCAGACAATGGGATTATGCAGGCTCA GGGTGATTTGCTATATGATGATCCAAACTGGTTTGGTAATTTTCTGTCAGATGACACAAA TCCACAACCAAGTGGATTATATGAGAATGCACCATTGCTTCCTTATGGCACTAATCCTGA TGTACTTTCCATGGACTCCGGCGACGAGTCCTTGCAAGATTTGTTCAATAGCATGGACGA TTCAAGTTGGCAGAATGATGTATGGAGCAACGGATTTGGATTTAATCCCATGCATCAGCA GTTACAGTCTACTGTGCATCCGAACTATATATTTTCTCAACAGGGCATTGCACGCAGGAG GCTTCGGCTACTAGATTCATTGTCTGATGTCAATGTTGAGAGTAGAGAGAGCATGACCAG AGATGAACATGAAGATGAAGAATCAGATATTGTAACTTCGAAATATAGGAGTGAATCTGT TGAATCATCTGCAGATGTAGATGAGTCTGAGTCAACCGGGGTTACTATTATGAGCCGGCG CCGTGCTCTAACTAAAAGTGTGCCTTCCGACCGCGATGATGCTGAATCAACGGGGATTAC TATTATGGGCCGGCGCTCTGCTCCAAGTTCAAATGCGCCTTCCGATGAAGCTGATGCTGA GGCAACAGGGATTAATATTGTGAGCCGACGCACTGCTCCAAGTTCAAGCACAGATAACTC ATTTACCACCGAACAGGGGACTGCAGTGCGAAGGTTGCGGCTACAATCGAACCTTGACGC AGGATCATGTTCCAGTGTTGATGGTTTGTCAAGTTGCATTATAGAACATGGAAGTGAAAA CGAAGGGCTGGAAGCTGAGATTGACGAGCATGTGGATACAAACTTCCTTGATGATGTTGG TTTTGCTGGCAACAGTCATGCTGATGAGCATATGTACATGCCTGATCATGAAGCTAATTC TCTTACGAGGCTGCGGAAGACAGCAGAGAAAAGCGACAAGGAGAACAAGCAGGAGTGTGG TCCCCAGTCACATGTGAGAGCACCAAGGAAGAGGGGAGGCTTCGCAGCACGCATGATCTT GCCAGTTCTGTCGGTGGCTCTTCTCGTTCTTGTTAGCGTTGGGGTCTACGGATGGGCATA ATAGCTCTCTTAAAATGGGATTTAATGTGTCACATTTTCCCCACATCGGCTGTGAGCATT GTACATACTGTGTCTTACTGCCCGCGTTTAGACGGTTGTAAGACAGAGAAGTGTTTGTTC CCCTTTCGGCGGGGAAGTGTAAGTGAGGTAGCAAATGAGAAGCGGGATGAAGCAAGGAGC AAGTGTTGCTGTAGATGCCTGTGACTTGGTACATGCTAGTTTTCGTTTTTCTGTCACCGC AGGTGTTGGCAACCAGGTTGTAGTCATCCATTATGCGTGTTGTTGTGATGTTGTAAGGTC TGAACCTAATTAGATCTGTTGCAGATCCTTTTTCCCATTTTGTGGAACTTTGCAGTCGCT TCATTTTTAGTGATGCAGTTGCTTCATTTTTAGTGATTCATCTCCCAATTTTAAGCGGGG TGAAATACTACCTGAGCTCTCAGCAGTCAGCACCAGCACACATCTGGTAAAAAAGAAAAC CGAGGTAAAGTAATTGCCGCCCTGCCGCCGCCGCAGCGAGAAAAAGAAGAGATGTGGACT TTTTCAGACTTTAATCTGAAACTATAGCATAAACTAAACTTTGTATGAAACTATTTCACG ATGTGACCCTTTTAAAAATGTTAGAACCTGTG
Protein Sequence (703 aa)
>BART1_0-u53381.002 703 150831_barley_pseudomolecules MTVMELKALPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPDKAL IRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIKSKGEKKKQHMIGMKKTL VFHRGRAPKGERTGWIMHEYRTTEPEFESGEQGGYVLYRLFQKQVEKTERSIPEEMDRSG YSPTPSRSTPDNMEANEEAITLINKESPESGLHGCPIELPCTIETLGAPVTRWLADRNGN PGTDEANDVGMPFHRGVDESPKADLSVGSLAHLIDSQTKNLGSHEFATVSAPMLPDDHLD NLLLHLTHNSVEDFLNETIADPDELSSTACKVQYDSDNGIMQAQGDLLYDDPNWFGNFLS DDTNPQPSGLYENAPLLPYGTNPDVLSMDSGDESLQDLFNSMDDSSWQNDVWSNGFGFNP MHQQLQSTVHPNYIFSQQGIARRRLRLLDSLSDVNVESRESMTRDEHEDEESDIVTSKYR SESVESSADVDESESTGVTIMSRRRALTKSVPSDRDDAESTGITIMGRRSAPSSNAPSDE ADAEATGINIVSRRTAPSSSTDNSFTTEQGTAVRRLRLQSNLDAGSCSSVDGLSSCIIEH GSENEGLEAEIDEHVDTNFLDDVGFAGNSHADEHMYMPDHEANSLTRLRKTAEKSDKENK QECGPQSHVRAPRKRGGFAARMILPVLSVALLVLVSVGVYGWA