Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU3Hr1G007830	98.9	-	-	5623	-61	Containing

Transcripts from Gene BART1_0-u17640

Transcript	Length(bp)	Description
BART1_0-u17640.001	2634	2634 bp MSTRG.17640.1 MSTRG.17640
BART1_0-u17640.002	2580	2580 bp MSTRG.17640.2 MSTRG.17640
BART1_0-u17640.003	2545	2545 bp MSTRG.17640.3 MSTRG.17640
BART1_0-u17640.004	2659	2659 bp MSTRG.17640.4 MSTRG.17640
BART1_0-u17640.005	2801	2801 bp MSTRG.17640.5 MSTRG.17640
BART1_0-u17640.006	2614	2614 bp MSTRG.17640.6 MSTRG.17640
BART1_0-u17640.007	2653	2653 bp MSTRG.17640.7 MSTRG.17640
BART1_0-u17640.008	2657	2657 bp MSTRG.17640.8 MSTRG.17640
BART1_0-u17640.009	2442	2442 bp MSTRG.17640.9 MSTRG.17640
BART1_0-u17640.010	1104	1104 bp MSTRG.17640.10 MSTRG.17640
BART1_0-u17640.011	1109	1109 bp MSTRG.17640.11 MSTRG.17640
BART1_0-u17640.012	855	855 bp MSTRG.17640.12 MSTRG.17640

Exon Structure of BART1_0-u17640

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g19480.1	+2	5e-51	195	112/219 (51%)	protein|SET domain containing protein, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi1g64460.4.p	+2	1e-57	213	122/223 (55%)	pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0009294	DNA mediated transformation
GO:1900055	regulation of leaf senescence
GO:0006342	chromatin silencing
GO:0045857	negative regulation of molecular function, epigenetic
GO:0005677	chromatin silencing complex
GO:0009965	leaf morphogenesis
GO:0006349	regulation of gene expression by genetic imprinting
GO:0034968	histone lysine methylation
GO:0009506	plasmodesma
GO:0005515	protein binding
GO:0009737	response to abscisic acid
GO:0009908	flower development
GO:0031519	PcG protein complex
GO:0003727	single-stranded RNA binding
GO:0018024	histone-lysine N-methyltransferase activity
GO:0016021	integral component of membrane
GO:0030154	cell differentiation
GO:0010228	vegetative to reproductive phase transition of meristem
GO:2000028	regulation of photoperiodism, flowering

Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons