- Transcript BART1_0-u17640.008
- Transcript IDBART1_0-u17640.008
- Gene IDBART1_0-u17640
Barley RTD
Exon Structure of BART1_0-u17640.008
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 18479150 | 18478631 | - |
| chr3H | 2 | 18479916 | 18479746 | - |
| chr3H | 3 | 18480286 | 18480169 | - |
| chr3H | 4 | 18481341 | 18481201 | - |
| chr3H | 5 | 18481920 | 18481434 | - |
| chr3H | 6 | 18482405 | 18482038 | - |
| chr3H | 7 | 18483644 | 18483139 | - |
| chr3H | 8 | 18484119 | 18483774 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.0621944 | 0.055034 |
| morex | ETI | 0.0550107 | 0.063307 | 0.108094 |
| morex | LEA | 0.0417073 | 0 | 0 |
| morex | EPI | 0.0264082 | 0.0630322 | 0 |
| morex | ROO | 0 | 0.0470933 | 0.174863 |
| morex | ROO2 | 0.0000746596 | 0.0182363 | 0 |
| morex | NOD | 0.0291188 | 0 | 0.143944 |
| morex | RAC | 0 | 0.058039 | 0.0597795 |
| morex | INF1 | 0.143456 | 0.0234612 | 0.475151 |
| morex | INF2 | 0 | 0.112429 | 0 |
| morex | CAR5 | 0.0154768 | 0.000252677 | 0.814679 |
| morex | CAR15 | 0.00000227715 | 3.48796 | 5.14673 |
| morex | LEM | 0.0554771 | 0 | 0 |
| morex | LOD | 0 | 0.135665 | 0 |
| morex | PAL | 0 | 0.000000000363188 | 0.103814 |
| morex | SEN | 0 | 0.000000495297 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os03g19480.1 | +2 | 2e-51 | 196 | 115/228 (50%) | protein|SET domain containing protein, expressed |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | Bradi1g64460.4.p | +2 | 5e-62 | 224 | 127/230 (55%) | pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2657 bp)
>BART1_0-u17640.008 2657 150831_barley_pseudomolecules CGTCATCCTACCCCCCACACATCGCTACCCTATGCCGCCGTCATCATCGCCGAGGGCATC CCCAGTCCCCGACCGCGGCCACCCGATCCCATGCCTGACCTTGGCGGCGCCGACACGTCC CCGATCGCGGTCTCCCCGCTCCCTCCCGATCGCGGCAGGACCGCCTCGTCCCCAACCGCG GCCGCGTCACCCTGTCAAAGAACGGTGACGCCTCACCCCGTCCCCGACCACGGCCGCCTC GCGTCGAGGAGCAGTAGGTGGTCGGCCTACGGCGGCTCGCACCATCGCCATGGTGTCGTC CTCCTCCAAAGCCTCCTCCTCCTCCTCCCACCGGGATGGCCCCATGTGGCTCGACGTGGG CACCTCCGCGCTCATGGCGCTCCACGGGAAGCTGACGCAGATGAAGCGCCAAATCCAGCA GGCCTGCCTCACCTCCATGAGGATAAAGCACCGGCATCATCTACGGAATTCCTTGTGAAT TGTGAGTTTCGGGTCACTCAATGTGATCCTCCTGTTTTGAGCTTGTGTGCCTATGTTGTG TTTTGACAGGAGAAGCTGGAGGCAAACAGGAGGGCGTTGCAGAAGCACACCTGCGGCGTC GAGGGGCTCGGAGAGCAGCAATGTGTTGTCGCAGCTCGCCTCGGACGGCCAGTCCAGGAT CATTGGGTGGAACCTGGCGAGAGGGTCGGGGGAGAGGAAGGTTGTGCATGTGCAGGAGGA GAACCTGTCGGCCGACGGGATGCTCGTGCTCTGCAGCTCCGGCAACGGCGCACAAACCAT CGTTTTGCAGCTTATGAAGCTGTCGTCGGTTGATAAGATTCCTCCCTACACCACGTGGAT CTTCCTGGACAAAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAAT TTACTATGATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGC ACAACCTGAGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTAATA ATAGAATATATATTGGCCAATTGAGATGCTTTTAATGCATATTGATGTTGAACTTGAAAA TGCTTGTTGGCTAGCACATATTCTAGAAGGACTTAGTAGTAGACTATTCTTTAATACTTT GTTTCATCGCCAATTTTGCATGTTTGATGTGGCACACGTGCGGCATGTTCGATGTGGCCG CCAAGGTGGAGGTGGCATTGGTTCAACTTGATATTATGCCAGGCGAGAGACACATAGAGT TAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGAGATGATTGTCGTCCCTTGGTCGAGGA TGGAGCCGACACGCTGTGCCGCCACAGCTATTGAGGCTATCCGTCAAGTGTGGCCGGATT TGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTTCTCCTCTATGCACGCTTGCTTTATCG TTGCCGGATGAATGCACTCGAGGAGGCGGCAGTGGATCCCTAGGTTTTTCGGTTTTTGAA AGAGAATTTTGTTTTTGCGATTTTCTACATGCGTTCCATCAGCAATTGAGAATCATGTGC AAGCCGTGAGATTTGGGAACCACTAGATTGTGACAGTGCAGGAAGTAAAATATGCGTCGG AGACGGCTATGAAGGCATGAACATGAACCAGAGGGCCGTGAGGGACATCAAGAATATGAT CAGCATGTTTGTGAGATGTTCTTCCATGTTCAGATTTTCACATGACTGATGCCCAGAGCT AGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGCAAGGGATACTTATGGAACAT ATACGTTGTGTCAATGCATCGTTAGGCGAACATCTTTCTATTTTGCAGCAAGTGCAGATG GTTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTGAGAGGCCCTCGGGAGTGAAA AAACTATCGTTTGAGATAGTTGTTGGATTGAACAGCCGGAGCGTGGTGGCAAGGCAGCTA GAGACAAAAAGGGAATTGGTGAAAAAGCAACTCGCACATCTATAGGTCTCTTGGAATCTC ACATTTATCAATTTATGGAAAGGGGCATCCATTGGCATTCTAATAATTTTGTTAGAGAAC GGCATAGACTGAGGCAGCCGATGTGAACGAACACCGGGTACCCATAAACAAGAGGAAAAA ACAACACATGTACAACGACAACAAGGTTAGCTAAGAAAAAATCAGGCTGCCGGTGTCTAT TAACCCAGGGCATGATCTTGGGACGTCCGGCTTCTTTCCAAAGCGAGATCTCATCCAACA TCAAGTTGAAGACACTCCAAATGGTGGAACTTAAGTTGCGGACAATTCTGGTGTTTCGCT CCTTCCACGTGAACCACCAGATAGCCTGCACTAAGTAGTTCCATCCCTTCTTCTTCGGGG CAGCAAGACTGGCAGCGGAACTTTCCACTCGATCCGAGAGGCGGGTGGTGTCGCTGGAGG GGCCTAAAGTAGCCGAGGTTGCAGGTAGCAGCATGAGCCGCCAAATAGCCTGAAAAATAG GCATTGAGTGAGCAAAAGAATGTTGTCTTCATCCGTTGAGCGACTCATGTAGTACACGGG ATCAGGGGAGCAGTCCCTTTTCTGCACATTGTCCCCGGTATATGTTGGCTTGGCCTTCTA CTGCCCTTTTAGTTATG
Protein Sequence (161 aa)
>BART1_0-u17640.008 161 150831_barley_pseudomolecules MLCFDRRSWRQTGGRCRSTPAASRGSESSNVLSQLASDGQSRIIGWNLARGSGERKVVHV QEENLSADGMLVLCSSGNGAQTIVLQLMKLSSVDKIPPYTTWIFLDKNQRMADDQSIAGR RRIYYDSARNEALIWSESDEQIAQPEEEKHVFTEAEDQLIW