- Transcript BART1_0-u17640.012
- Transcript IDBART1_0-u17640.012
- Gene IDBART1_0-u17640
Barley RTD
Exon Structure of BART1_0-u17640.012
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr3H | 1 | 18480286 | 18480220 | - |
| chr3H | 2 | 18481335 | 18481201 | - |
| chr3H | 3 | 18481920 | 18481434 | - |
| chr3H | 4 | 18482409 | 18482244 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.875709 | 0.358494 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0.777423 | 0 | 0 |
| morex | EPI | 0 | 0.181724 | 0 |
| morex | ROO | 0.374551 | 0 | 0.0894081 |
| morex | ROO2 | 0 | 0.0198697 | 0 |
| morex | NOD | 0 | 0.436461 | 0.369863 |
| morex | RAC | 0 | 0 | 0 |
| morex | INF1 | 3.65588 | 2.61417 | 2.57783 |
| morex | INF2 | 2.24339 | 2.45044 | 3.78494 |
| morex | CAR5 | 6.83166 | 7.10141 | 5.50706 |
| morex | CAR15 | 2.52972 | 3.54292 | 4.38493 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0.25012 | 0.00000000619846 | 0 |
| morex | PAL | 0.0000372656 | 0.519069 | 0.0571744 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | None | - | - | - | - | - |
| TAIR PP10 | None | - | - | - | - | - |
| BRACH PP3 | None | - | - | - | - | - |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (855 bp)
>BART1_0-u17640.012 855 150831_barley_pseudomolecules GCAGAAACCAAAGAATGGCCGATGATCAATCAATTGCTGGTAGGAGGAGAATTTACTATG ATTCAGCTCGCAACGAGGCTCTAATCTGGAGTGAAAGTGATGAACAAATTGCACAACCTG AGGAAGAGAAGCATGTTTTCACTGAAGCAGAAGATCAGCTAATATGGTTCAACTTGATAT TATGCCAGGCGAGAGACACATAGAGTTAGGGAACGGCCGAGCTCGCCTCCGAGGAAGAGA GATGATTGTCGTCCCTTGGTCGAGGATGGAGCCGACACGCTGTGCCGCCACAGCTATTGA GGCTATCCGTCAAGTGTGGCCGGATTTGGGCATCTGGTGTTGTCACCTAGGCTGGTGTTT CTCCTCTATGCACGCTTGCTTTATCGTTGCCGGATGAATGCACTCGAGGAGGCGGCAGTG GATCCCTAGGTTTTTCGGTTTTTGAAAGAGAATTTTGTTTTTGCGATTTTCTACATGCGT TCCATCAGCAATTGAGAATCATGTGCAAGCCGTGAGATTTGGGAACCACTAGATTGTGAC AGTGCAGGAAGTAAAATATGCGTCGGAGACGGCTATGAAGGCATGAACATGAACCAGAGG GCCGTGAGGGACATCAAGAATATGATCAGCATGTTTGTGAGATGTTCTTCCATATTTTCA CATGACTGATGCCCAGAGCTAGCAGGTCTCAGGACTGAGCTCGTGCCCATGCGGCAGAGC AAGGGATACTTATGGAACATATACGTTGTGTCAATGCATCGTTAGGCGAACATCTTTCTA TTTTGCAGCAAGTGCAGATGGTTATACGTTTGAAACATCAACTGGCCTGTCAAGAATGTG AGAGGCCCTCGGGAG
Protein Sequence ( aa)
>BART1_0-u17640.012 150831_barley_pseudomolecules