Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
BART1_0-u17640	98.9	-	-	5623	-61	Containing

Transcripts from Gene HORVU3Hr1G007830

Transcript	Length(bp)	Description
HORVU3Hr1G007830.1	2573	gene=HORVU3Hr1G007830 CDS=553-1071
HORVU3Hr1G007830.2	2565	gene=HORVU3Hr1G007830 CDS=553-957
HORVU3Hr1G007830.3	2590	gene=HORVU3Hr1G007830 CDS=553-1071
HORVU3Hr1G007830.4	214	gene=HORVU3Hr1G007830 CDS=59-214
HORVU3Hr1G007830.5	259	gene=HORVU3Hr1G007830 CDS=1-225

Exon Structure of HORVU3Hr1G007830

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os03g19480.1	+1	3e-51	195	112/219 (51%)	protein|SET domain containing protein, expressed
TAIR PP10	None	-	-	-	-	-
BRACH PP3	Bradi1g64460.4.p	+1	7e-58	213	122/223 (55%)	pacid=32796250 transcript=Bradi1g64460.4 locus=Bradi1g64460 ID=Bradi1g64460.4.v3.1 annot-version=v3.1

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons