- Gene BART1_0-u54453
- Gene IDBART1_0-u54453
- Location chr7H: 514440916 - 514444846
Barley RTD
Matching HORVU genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| HORVU ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| HORVU7Hr1G085150 | 97.6 | - | - | 3834 | 167 | Partial-Overlap |
Transcripts from Gene BART1_0-u54453
| Transcript | Length(bp) | Description |
|---|---|---|
| BART1_0-u54453.001 | 1452 | 1452 bp MSTRG.54453.1 MSTRG.54453 |
| BART1_0-u54453.002 | 1392 | 1392 bp MSTRG.54453.2 MSTRG.54453 |
| BART1_0-u54453.003 | 1890 | 1890 bp MSTRG.54453.3 MSTRG.54453 |
| BART1_0-u54453.004 | 1467 | 1467 bp MSTRG.54453.4 MSTRG.54453 |
| BART1_0-u54453.005 | 1497 | 1497 bp MSTRG.54453.5 MSTRG.54453 |
| BART1_0-u54453.006 | 1141 | 1141 bp MSTRG.54453.6 MSTRG.54453 |
| BART1_0-u54453.007 | 1449 | 1449 bp MSTRG.54453.7 MSTRG.54453 |
| BART1_0-u54453.008 | 1372 | 1372 bp MSTRG.54453.8 MSTRG.54453 |
| BART1_0-u54453.009 | 1455 | 1455 bp MSTRG.54453.9 MSTRG.54453 |
| BART1_0-u54453.010 | 1431 | 1431 bp MSTRG.54453.10 MSTRG.54453 |
| BART1_0-u54453.011 | 2371 | 2371 bp MSTRG.54453.11 MSTRG.54453 |
| BART1_0-u54453.012 | 1400 | 1400 bp MSTRG.54453.12 MSTRG.54453 |
| BART1_0-u54453.013 | 1317 | 1317 bp MSTRG.54453.13 MSTRG.54453 |
| BART1_0-u54453.014 | 2014 | 2014 bp MSTRG.54453.14 MSTRG.54453 |
| BART1_0-u54453.015 | 2928 | 2928 bp MSTRG.54453.15 MSTRG.54453 |
| BART1_0-u54453.016 | 1284 | 1284 bp MSTRG.54453.16 MSTRG.54453 |
| BART1_0-u54453.017 | 1465 | 1465 bp MSTRG.54453.17 MSTRG.54453 |
| BART1_0-u54453.018 | 1228 | 1228 bp MSTRG.54453.18 MSTRG.54453 |
| BART1_0-u54453.019 | 1570 | 1570 bp MSTRG.54453.19 MSTRG.54453 |
| BART1_0-u54453.020 | 1644 | 1644 bp MSTRG.54453.20 MSTRG.54453 |
| BART1_0-u54453.021 | 1447 | 1447 bp MSTRG.54453.21 MSTRG.54453 |
| BART1_0-u54453.022 | 1225 | 1225 bp MSTRG.54453.22 MSTRG.54453 |
| BART1_0-u54453.023 | 1705 | 1705 bp MSTRG.54453.23 MSTRG.54453 |
| BART1_0-u54453.024 | 2226 | 2226 bp MSTRG.54453.24 MSTRG.54453 |
| BART1_0-u54453.025 | 1803 | 1803 bp MSTRG.54453.25 MSTRG.54453 |
| BART1_0-u54453.026 | 1211 | 1211 bp MSTRG.54453.26 MSTRG.54453 |
| BART1_0-u54453.027 | 1483 | 1483 bp MSTRG.54453.27 MSTRG.54453 |
| BART1_0-u54453.028 | 2089 | 2089 bp MSTRG.54453.28 MSTRG.54453 |
| BART1_0-u54453.029 | 2016 | 2016 bp MSTRG.54453.29 MSTRG.54453 |
| BART1_0-u54453.030 | 2379 | 2379 bp MSTRG.54453.30 MSTRG.54453 |
| BART1_0-u54453.031 | 2734 | 2734 bp MSTRG.54453.31 MSTRG.54453 |
| BART1_0-u54453.032 | 2384 | 2384 bp MSTRG.54453.32 MSTRG.54453 |
| BART1_0-u54453.033 | 1604 | 1604 bp MSTRG.54453.33 MSTRG.54453 |
| BART1_0-u54453.034 | 1732 | 1732 bp MSTRG.54453.34 MSTRG.54453 |
| BART1_0-u54453.035 | 1552 | 1552 bp MSTRG.54453.35 MSTRG.54453 |
| BART1_0-u54453.036 | 1492 | 1492 bp MSTRG.54453.36 MSTRG.54453 |
| BART1_0-u54453.037 | 2493 | 2493 bp MSTRG.54453.37 MSTRG.54453 |
| BART1_0-u54453.038 | 2256 | 2256 bp MSTRG.54453.38 MSTRG.54453 |
| BART1_0-u54453.039 | 1340 | 1340 bp MSTRG.54453.39 MSTRG.54453 |
| BART1_0-u54453.040 | 1580 | 1580 bp MSTRG.54453.40 MSTRG.54453 |
| BART1_0-u54453.041 | 1207 | 1207 bp MSTRG.54453.41 MSTRG.54453 |
| BART1_0-u54453.042 | 1279 | 1279 bp MSTRG.54453.42 MSTRG.54453 |
| BART1_0-u54453.043 | 1153 | 1153 bp MSTRG.54453.43 MSTRG.54453 |
| BART1_0-u54453.044 | 1936 | 1936 bp MSTRG.54453.44 MSTRG.54453 |
| BART1_0-u54453.045 | 1423 | 1423 bp MSTRG.54453.45 MSTRG.54453 |
| BART1_0-u54453.046 | 775 | 775 bp MSTRG.54453.46 MSTRG.54453 |
Exon Structure of BART1_0-u54453
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.1 | +1 | 4e-148 | 342 | 163/181 (90%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G67280 @ ARAPORT AT1G67280.1 @ TAIR |
+1 | 5e-115 | 273 | 131/190 (69%) | Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350 |
| BRACH PP3 | Bradi3g14960.1.p | +1 | 2e-150 | 348 | 165/181 (91%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
GO Annotation
Generated by PANNZER| GO ID | GO terms |
|---|---|
| GO:0009570 | chloroplast stroma |
| GO:0009620 | response to fungus |
| GO:0004462 | lactoylglutathione lyase activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:1901700 | response to oxygen-containing compound |
| GO:0006950 | response to stress |
| GO:0008017 | microtubule binding |
| GO:0051213 | dioxygenase activity |
| GO:0001101 | response to acid chemical |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009628 | response to abiotic stimulus |
| GO:0031977 | thylakoid lumen |
| GO:0045122 | aflatoxin biosynthetic process |
| GO:0046872 | metal ion binding |
| GO:0019243 | methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione |
| GO:0010319 | stromule |
| GO:0016021 | integral component of membrane |
| GO:0019863 | IgE binding |
| GO:0055114 | oxidation-reduction process |
| GO:0010035 | response to inorganic substance |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons