- Transcript BART1_0-u54453.026
- Transcript IDBART1_0-u54453.026
- Gene IDBART1_0-u54453
Exon Structure of BART1_0-u54453.026
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 514441144 | 514440926 | - |
chr7H | 2 | 514442287 | 514442135 | - |
chr7H | 3 | 514442474 | 514442367 | - |
chr7H | 4 | 514442603 | 514442556 | - |
chr7H | 5 | 514442934 | 514442719 | - |
chr7H | 6 | 514443079 | 514443015 | - |
chr7H | 7 | 514443422 | 514443298 | - |
chr7H | 8 | 514443661 | 514443512 | - |
chr7H | 9 | 514444656 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 1.56506 |
morex | ETI | 222.912 | 189.095 | 130.537 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 167.041 | 197.068 | 146.288 |
morex | ROO | 0 | 0.220879 | 0 |
morex | ROO2 | 167.163 | 199.227 | 209.943 |
morex | NOD | 0 | 180.425 | 214.905 |
morex | RAC | 281.802 | 255.161 | 214.032 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 0 | 0 | 0 |
morex | CAR5 | 0 | 0 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 153.586 | 119.511 | 180.595 |
morex | LOD | 223.554 | 328.881 | 181.196 |
morex | PAL | 225.086 | 173.858 | 103.318 |
morex | SEN | 121.081 | 82.3575 | 154.958 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g09250.2 | +3 | 0.0 | 555 | 269/292 (92%) | protein|glyoxalase family protein, putative, expressed |
TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.4 @ TAIR |
+3 | 1e-156 | 442 | 209/281 (74%) | Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997518 FORWARD LENGTH=283 |
BRACH PP3 | Bradi3g14960.1.p | +3 | 0.0 | 570 | 275/292 (94%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1211 bp)
>BART1_0-u54453.026 1211 150831_barley_pseudomolecules TGAGGAGGTACCACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTC CTTGGAAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTAT TTCCGGGTGCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTG GAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATG CTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGA TGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGT TTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAATTATGGTGTTGACAAGT ACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAATGAGGATGTGTACAAGCTGT CTGAGACAATTAAATCATCTGATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGG GAGGGTCCACTGTGATTGCCTTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCC AGAGGGGTCCGACGCCTGAGCCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATC GGGCTATCATGTTCTACGAGAAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGC CTCAGTATAAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTC TGGAGTTGACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGG TTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAAAG AACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAATCA CCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTTCTGGTGGACTACGCAGACTTCCTCA AGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTATGT AGCAATGGTCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGCGAT GTAATAAAAAGGCAGCCTCTTCCGCTCGACGAATAAAAATAAAAGCAACTACCGCATGCC CATGCCGTCAT
Protein Sequence (291 aa)
>BART1_0-u54453.026 291 150831_barley_pseudomolecules MATGSEAGKSAEAVLEWPKQDKKRMLHAVYRVGDLDKTIKCYTECFGMKLLRKRDVPEEK YTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIANEDVYKLSETIKSSDCCKIT REPGPVKGGSTVIAFAQDPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKALGMK LLRKKDVPQYKYTIAMMGYAEEDKTTVLELTYNYGVTEYNKGNAYAQVAIGTDDVYKSAE AVELVTKELGGKILRQPGPLPGLNTKITSFLDPDGWKVVLVDYADFLKELH