- Transcript BART1_0-u54453.013
- Transcript IDBART1_0-u54453.013
- Gene IDBART1_0-u54453
Exon Structure of BART1_0-u54453.013
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 514441144 | 514440920 | - |
chr7H | 2 | 514442287 | 514442135 | - |
chr7H | 3 | 514442474 | 514442367 | - |
chr7H | 4 | 514442603 | 514442556 | - |
chr7H | 5 | 514443079 | 514442719 | - |
chr7H | 6 | 514443422 | 514443298 | - |
chr7H | 7 | 514443632 | 514443512 | - |
chr7H | 8 | 514444645 | 514444470 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 19.636 | 8.09138 | 9.53335 |
morex | ETI | 14.7544 | 11.0489 | 7.0783 |
morex | LEA | 2.62022 | 1.82475 | 1.46044 |
morex | EPI | 10.6823 | 12.2801 | 12.918 |
morex | ROO | 2.60611 | 2.63461 | 2.0418 |
morex | ROO2 | 14.8248 | 18.8023 | 17.0528 |
morex | NOD | 5.36083 | 7.77294 | 4.31508 |
morex | RAC | 21.6969 | 17.8049 | 20.3874 |
morex | INF1 | 2.89158 | 1.90615 | 2.19581 |
morex | INF2 | 1.2175 | 1.63067 | 0 |
morex | CAR5 | 8.15187 | 5.90731 | 9.30676 |
morex | CAR15 | 2.49198 | 2.91708 | 2.56742 |
morex | LEM | 7.86687 | 5.07421 | 7.84772 |
morex | LOD | 16.5853 | 20.3104 | 16.6516 |
morex | PAL | 12.6439 | 12.8439 | 10.9777 |
morex | SEN | 8.5841 | 7.35296 | 9.62088 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g09250.2 | +1 | 5e-153 | 355 | 174/189 (92%) | protein|glyoxalase family protein, putative, expressed |
TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.6 @ TAIR |
+1 | 2e-120 | 291 | 140/193 (73%) | Symbols: GLX1 | glyoxalase I homolog | chr1:3995928-3997518 FORWARD LENGTH=322 |
BRACH PP3 | Bradi3g14960.1.p | +1 | 8e-125 | 364 | 178/200 (89%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1317 bp)
>BART1_0-u54453.013 1317 150831_barley_pseudomolecules CACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGGAAGCCT CTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCGGGGTGA GCATCCCCAAATCCATCTCCTTCGTCCTCTCTTCCGCTTGCTTCCTTTACGCGCCGGGAT GGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGA CAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGTG TTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTA CACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTTA CAATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAAA TGAGGATGTATGTATTGTTTACCTGCAACATCTTACCCTTTATGTTACAGACCCTTGGGC TTGTTTGATGTCATGGATGCAATGCAGGTGTACAAGCTGTCTGAGACAATTAAATCATCT GATTGTTGTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCC TTTGCACAAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAG CCTCTCTGTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAG AAGGCCCTTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAGTACACCATT GCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTGGAGTTGACATACAACTAT GGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGGTTGCTATTGGCACTGACGAT GTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCAAAGAACTAGGTGGAAAGATTCTA AGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAATCACCTCTTTCCTTGACCCAGAT GGCTGGAAAGTGGTTCTGGTGGACTACGCAGACTTCCTCAAGGAGCTGCACTGAAGATGA GCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTATGTAGCAATGGTCTGTGTGATGT AATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGCGATGTAATAAAAAGGCAGCCTCT TCCGCTCGACGAATAAAAATAAAAGCAACTACCGCATGCCCATGCCGTCATTNNNNN
Protein Sequence (214 aa)
>BART1_0-u54453.013 214 150831_barley_pseudomolecules MYCLPATSYPLCYRPLGLFDVMDAMQVYKLSETIKSSDCCKITREPGPVKGGSTVIAFAQ DPDGYLFELIQRGPTPEPLCQVMLRVGDLDRAIMFYEKALGMKLLRKKDVPQYKYTIAMM GYAEEDKTTVLELTYNYGVTEYNKGNAYAQVAIGTDDVYKSAEAVELVTKELGGKILRQP GPLPGLNTKITSFLDPDGWKVVLVDYADFLKELH