- Transcript BART1_0-u54453.023
- Transcript IDBART1_0-u54453.023
- Gene IDBART1_0-u54453
Exon Structure of BART1_0-u54453.023
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 514441144 | 514440925 | - |
chr7H | 2 | 514442603 | 514442135 | - |
chr7H | 3 | 514442934 | 514442719 | - |
chr7H | 4 | 514443422 | 514443015 | - |
chr7H | 5 | 514443661 | 514443512 | - |
chr7H | 6 | 514444771 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materialsSample | Treatment | Rep 1 | Rep 2 | Rep 3 |
---|---|---|---|---|
morex | EMB | 0 | 0 | 0 |
morex | ETI | 0 | 0 | 0 |
morex | LEA | 0 | 0 | 0 |
morex | EPI | 0 | 0 | 0 |
morex | ROO | 0 | 0 | 0 |
morex | ROO2 | 0 | 0 | 0 |
morex | NOD | 0 | 0 | 0 |
morex | RAC | 0 | 0 | 0 |
morex | INF1 | 0 | 0 | 0 |
morex | INF2 | 0 | 0 | 0 |
morex | CAR5 | 0 | 0 | 0 |
morex | CAR15 | 0 | 0 | 0 |
morex | LEM | 0 | 0 | 0 |
morex | LOD | 0 | 0 | 0 |
morex | PAL | 0 | 0 | 0 |
morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g09250.2 | +3 | 4e-103 | 269 | 135/177 (76%) | protein|glyoxalase family protein, putative, expressed |
TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.6 @ TAIR |
+3 | 2e-80 | 215 | 109/177 (62%) | Symbols: GLX1 | glyoxalase I homolog | chr1:3995928-3997518 FORWARD LENGTH=322 |
BRACH PP3 | Bradi3g14960.1.p | +3 | 7e-106 | 270 | 134/177 (76%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1705 bp)
>BART1_0-u54453.023 1705 150831_barley_pseudomolecules CTTGAGTGCCGGCATGGCCCATTTGTAACCTTGCTGGGCCAGGCCCATCCATGCCGACAC GCGCCCACAGCCCATCTGGCCAGCTTTAGTGGGAGGGATGCGCTTTTACAGCCTGTGAGG AGGTACCACGTCGCCATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGG AAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCG GGTGCATAACAACTCTTACAGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAG TCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTT TACCGTGTGGGAGATCTTGACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAG CTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGA CCTGAGGATACTAATTTTGCACTTGAGCTGACTTACAGTATGTTCATCGTCCACTCACAG TTGTTTCTAATGCAGCCGGTTTGATATTCTTGTTAATGTTTGGGCAAAGTGTGTATCCAC CTCAGTGAGAAGACTGGCAAACTAACGGGGCCTTGTTCTTCTCTCTACATATGAACCGAT AAACTATTTTGTGGGACTATACTGTCATTGTTTGCCACCTCCTGTTGTGCTAATATGCTC GTTCTCGTTTGATAGATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGACATT TTGCCATCGCAAATGAGGATGTGTACAAGCTGTCTGAGACAATTAAATCATCTGATTGTT GTAAGATCACTCGTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCCTTTGCAC AAGACCCAGATGGTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAGCCTCTCT GTCAAGTTATGCTTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAGAAGGCCC TTGGGATGAAGCTTCTGAGGAAGAAGGATGTGCCTCAGTATAAGGTACATCACATGACAA TTGTTGTGTTGATGCCATTTGTCCTCTAAATTTTGATACACTGAGCATATTTATGATTTG TGCAGTACACCATTGCCATGATGGGCTATGCTGAGGAGGACAAGACCACTGTTCTGGAGT TGACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTCAGGTATTGA CAGGTTTTCTTCTGCGCTTATTTCCTTTTCTAAGTTTTGGCATTTCTTAATTATTGTGTT GCCTAAGTGCAGGTTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAG CTGGTTACCAAAGAACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTG AACACCAAAATCACCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTTCTGGTGGACTAC GCAGACTTCCTCAAGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGG AGGAACCGTATGTAGCAATGGTCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATG GTCTGTGTGCGATGTAATAAAAAGGCAGCCTCTTCCGCTCGACGAATAAAAATAAAAGCA ACTACCGCATGCCCATGCCGTCATT
Protein Sequence ( aa)
>BART1_0-u54453.023 150831_barley_pseudomolecules