- Gene HORVU7Hr1G085150
- Gene IDHORVU7Hr1G085150
- Location chr7H: 514440652 - 514444749
Barley RTD
Matching BART genes
BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).| BART ID | Percentage overlap | BART Gene Direction | HORVU Gene Direction | Overlap Length | Gene Length Difference | Overlapping Status |
|---|---|---|---|---|---|---|
| BART1_0-u54453 | 97.6 | - | - | 3834 | 167 | Partial-Overlap |
Transcripts from Gene HORVU7Hr1G085150
| Transcript | Length(bp) | Description |
|---|---|---|
| HORVU7Hr1G085150.1 | 1370 | gene=HORVU7Hr1G085150 CDS=3-1055 |
| HORVU7Hr1G085150.2 | 1307 | gene=HORVU7Hr1G085150 CDS=3-995 |
| HORVU7Hr1G085150.3 | 1241 | gene=HORVU7Hr1G085150 CDS=1-585 |
| HORVU7Hr1G085150.4 | 963 | gene=HORVU7Hr1G085150 CDS=2-787 |
| HORVU7Hr1G085150.5 | 1341 | gene=HORVU7Hr1G085150 CDS=247-1182 |
| HORVU7Hr1G085150.6 | 783 | gene=HORVU7Hr1G085150 CDS=1-420 |
| HORVU7Hr1G085150.7 | 693 | gene=HORVU7Hr1G085150 CDS=3-557 |
| HORVU7Hr1G085150.8 | 871 | gene=HORVU7Hr1G085150 CDS=1-735 |
| HORVU7Hr1G085150.9 | 965 | gene=HORVU7Hr1G085150 CDS=89-937 |
| HORVU7Hr1G085150.10 | 965 | gene=HORVU7Hr1G085150 CDS=89-964 |
| HORVU7Hr1G085150.11 | 125 | gene=HORVU7Hr1G085150 CDS=1-123 |
| HORVU7Hr1G085150.12 | 851 | gene=HORVU7Hr1G085150 CDS=293-622 |
Exon Structure of HORVU7Hr1G085150
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os08g09250.2 | +3 | 0.0 | 555 | 269/292 (92%) | protein|glyoxalase family protein, putative, expressed |
| TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.4 @ TAIR |
+3 | 2e-156 | 444 | 209/281 (74%) | Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997518 FORWARD LENGTH=283 |
| BRACH PP3 | Bradi3g14960.1.p | +3 | 0.0 | 570 | 275/292 (94%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons