- Transcript HORVU7Hr1G085150.2
- Transcript IDHORVU7Hr1G085150.2
- Gene IDHORVU7Hr1G085150
Exon Structure of HORVU7Hr1G085150.2
Chromosome | Exon | Start | Stop | Direction |
---|---|---|---|---|
chr7H | 1 | 514440788 | 514440655 | - |
chr7H | 2 | 514441144 | 514440925 | - |
chr7H | 3 | 514442287 | 514442135 | - |
chr7H | 4 | 514442474 | 514442367 | - |
chr7H | 5 | 514442603 | 514442556 | - |
chr7H | 6 | 514442934 | 514442719 | - |
chr7H | 7 | 514443079 | 514443015 | - |
chr7H | 8 | 514443422 | 514443298 | - |
chr7H | 9 | 514443642 | 514443512 | - |
chr7H | 10 | 514444636 | 514444530 | - |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Homology to Model Species (BLASTX to E-value < 1e-30)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP7 | LOC_Os08g09250.2 | +3 | 0.0 | 555 | 269/292 (92%) | protein|glyoxalase family protein, putative, expressed |
TAIR PP10 | AT1G11840 @ ARAPORT AT1G11840.4 @ TAIR |
+3 | 2e-156 | 443 | 209/281 (74%) | Symbols: ATGLX1, GLX1 | glyoxalase I homolog | chr1:3996045-3997518 FORWARD LENGTH=283 |
BRACH PP3 | Bradi3g14960.1.p | +3 | 0.0 | 570 | 275/292 (94%) | pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (1307 bp)
>HORVU7Hr1G085150.2 1307 150831_barley_pseudomolecules ATCAACGCAATCATAAGTATCGGTGCCGGACTCTCTTCTCCTTGGAAGCCTCTAGACTGA GCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCGGGGTGACAACAGGGA TGGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGGAATGGCCTAAGCAGG ACAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTTGACAAAACCATTAAGT GTTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGATGTCCCAGAAGAGAAGT ACACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTTGCACTTGAGCTGACTT ACAATTATGGTGTTGACAAGTACGACATTGGAGCGGGCTTTGGACATTTTGCCATCGCAA ATGAGGATGTGTACAAGCTGTCTGAGACAATTAAATCATCTGATTGTTGTAAGATCACTC GTGAACCTGGTCCTGTCAAGGGAGGGTCCACTGTGATTGCCTTTGCACAAGACCCAGATG GTTACTTGTTTGAGCTTATCCAGAGGGGTCCGACGCCTGAGCCTCTCTGTCAAGTTATGC TTCGTGTTGGTGACCTTGATCGGGCTATCATGTTCTACGAGAAGGCCCTTGGGATGAAGC TTCTGAGGAAGAAGGATGTGCCTCAGTATAAGTACACCATTGCCATGATGGGCTATGCTG AGGAGGACAAGACCACTGTTCTGGAGTTGACATACAACTATGGTGTCACGGAATATAACA AGGGCAATGCATATGCTCAGGTTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAG CAGTTGAGCTGGTTACCAAAGAACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTAC CGGGGCTGAACACCAAAATCACCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTTCTGG TGGACTACGCAGACTTCCTCAAGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAGTG TCGTGAGGAGGAACCGTATGTAGCAATGGTCTGTGTGATGTAATAAAACAAACCTCATGT AGCAAATGGTCTGTGTGCGATGTAATAAAAAGGCAGCCTCTTCCGCTCGACGAATAAAAA TAAAAGCAACTACCGCATGCCCATGCCGTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNCATTGGCCTAGTGTTATTAAGTTGCTTGCATTTTG GTTATAACTACAAAGTTGATTGTTAGTTCTGGTTAAAACATTAACCC