Transcript Data
Barley RTD
Links



Exon Structure of HORVU7Hr1G085150.7

ChromosomeExonStartStopDirection
chr7H1514441144514440967-
chr7H2514442287514442135-
chr7H3514442425514442367-
chr7H4514443422514443313-
chr7H5514443642514443512-
chr7H6514444591514444530-


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os08g09250.3 +3 2e-69 211 103/150 (69%) protein|glyoxalase family protein, putative, expressed
TAIR PP10 AT1G67280 @ ARAPORT
AT1G67280.2 @ TAIR		 +3 1e-58 186 98/165 (59%) Symbols: | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190134 REVERSE LENGTH=262
BRACH PP3 Bradi3g14960.1.p +3 3e-73 225 110/137 (80%) pacid=32813745 transcript=Bradi3g14960.1 locus=Bradi3g14960 ID=Bradi3g14960.1.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (693 bp)

>HORVU7Hr1G085150.7 693 150831_barley_pseudomolecules
AAGCCTCTAGACTGAGCTCCTCATCAGCGTGGGACGGATCTCTGCCGGATCGTATTTCCG
GGGTGACAACAGGGATGGCTACCGGTAGCGAAGCTGGAAAGTCCGCCGAGGCCGTGCTGG
AATGGCCTAAGCAGGACAAAAAGAGGATGCTGCATGCTGTTTACCGTGTGGGAGATCTTG
ACAAAACCATTAAGTGTTACACAGAATGCTTTGGGATGAAGCTGCTGAGGAAAAGAGATG
TCCCAGAAGAGAAGTACACCAATGCGTTTCTTGGGTTTGGACCTGAGGATACTAATTTTG
CACTGGAGTTGACATACAACTATGGTGTCACGGAATATAACAAGGGCAATGCATATGCTC
AGGTTGCTATTGGCACTGACGATGTGTACAAGAGCGCCGAAGCAGTTGAGCTGGTTACCA
AAGAACTAGGTGGAAAGATTCTAAGGCAGCCAGGGCCACTACCGGGGCTGAACACCAAAA
TCACCTCTTTCCTTGACCCAGATGGCTGGAAAGTGGTTCTGGTGGACTACGCAGACTTCC
TCAAGGAGCTGCACTGAAGATGAGCAGGCTCAGATGTTAGTGTCGTGAGGAGGAACCGTA
TGTAGCAATGGTCTGTGTGATGTAATAAAACAAACCTCATGTAGCAAATGGTCTGTGTGC
GATGTAATAAAAAGGCAGCCTCTTCCGCTCGAC