Probe CUST_771_PI426222305 - General Information
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_771_PI426222305 | JHI_St_60k_v1 | DMT400032926 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
All Microarray Probes Designed to Gene DMG400012646
| Probe ID | Chip name | Transcript ID | Probe Sequence |
|---|---|---|---|
| CUST_1300_PI426222305 | JHI_St_60k_v1 | DMT400032924 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
| CUST_771_PI426222305 | JHI_St_60k_v1 | DMT400032926 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
| CUST_918_PI426222305 | JHI_St_60k_v1 | DMT400032927 | GGAGAAGCAACTCCAAAATCTTGTATAAAAAGCTATCTAGAGAGGTTCTCAAGTCATTTT |
Microarray Signals from CUST_771_PI426222305
| Treatment | Raw signal | Raw Std Err | Normalized signal | Normalized Std Err |
|---|---|---|---|---|
| Control 1h | 2757.1 | 421.021 | 3.08451 | 0.258382 |
| ABA 1h | 2115.6 | 515.093 | 2.58946 | 0.707004 |
| ACC 1h | 2284.12 | 333.137 | 2.49421 | 0.282254 |
| BABA 1h | 1286.42 | 340.905 | 1.39529 | 0.309996 |
| Chitin 1h | 887.674 | 127.298 | 1.10813 | 0.0907924 |
| Epi 1h | 1409.29 | 153.22 | 1.83933 | 0.192565 |
| SA 1h | 1173.8 | 237.422 | 1.2591 | 0.172505 |
| Me-JA 1h | 604.919 | 68.4186 | 0.836015 | 0.0502424 |
| Control 6h | 1040.92 | 241.862 | 1.12372 | 0.19816 |
| ABA 6h | 257.969 | 15.2725 | 0.277339 | 0.0246066 |
| ACC 6h | 984.969 | 190.568 | 0.944702 | 0.0909188 |
| BABA 6h | 515.153 | 113.674 | 0.503733 | 0.104231 |
| Chitin 6h | 753.825 | 154.056 | 0.779856 | 0.131137 |
| Epi 6h | 672.819 | 68.6854 | 0.676072 | 0.0834268 |
| SA 6h | 795.718 | 96.1812 | 0.907387 | 0.0667566 |
| Me-JA 6h | 430.886 | 49.7408 | 0.488932 | 0.0342783 |
Source Transcript PGSC0003DMT400032926 - Homology to Model Species (BLASTX to E-value < 1e-50)
| Database | Link to BLAST Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Tomato (ITAG) | Solyc02g093720.2 | +2 | 0.0 | 788 | 471/512 (92%) | genomic_reference:SL2.50ch02 gene_region:49041484-49045270 transcript_region:SL2.50ch02:49041484..49045270- functional_description:Os02g0200800 protein (Fragment) (AHRD V1 *-*- Q0E303_ORYSJ); contains Interpro domain(s) IPR009675 Targeting for Xklp2 |
| TAIR PP10 | AT5G40700.2 | +2 | 6e-28 | 115 | 67/155 (43%) | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27350.1); Has 475 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 43; Metazoa - 127; Fungi - 17; Plants - 143; Viruses - 7; Other Eukaryotes - 138 (source: NCBI BLink). | chr5:16292047-16293443 REVERSE LENGTH=303 |